PDB Chemical Component CTN
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CTN
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O5' |
C5' |
1.406 |
1.428 |
| O5' |
H5' |
0.950 |
0.967 |
| C5' |
C4' |
1.479 |
1.530 |
| C5' |
H5'1 |
1.116 |
1.091 |
| C5' |
H5'2 |
1.114 |
1.091 |
| C4' |
O4' |
1.445 |
1.444 |
| C4' |
C3' |
1.540 |
1.545 |
| C4' |
H4' |
1.115 |
1.090 |
| O4' |
C1' |
1.397 |
1.444 |
| C1' |
N1 |
1.499 |
1.464 |
| C1' |
C2' |
1.512 |
1.545 |
| C1' |
H1' |
1.115 |
1.091 |
| N1 |
C6 |
1.409 |
1.364 |
| N1 |
C2 |
1.404 |
1.346 |
| C6 |
C5 |
1.401 |
1.354 |
| C6 |
H6 |
1.103 |
1.080 |
| C5 |
C4 |
1.409 |
1.410 |
| C5 |
H5 |
1.103 |
1.080 |
| C4 |
N3 |
1.390 |
1.327 |
| C4 |
N4 |
1.337 |
1.376 |
| N3 |
C2 |
1.351 |
1.332 |
| C2 |
O2 |
1.252 |
1.220 |
| N4 |
HN41 |
1.020 |
0.970 |
| N4 |
HN42 |
1.020 |
0.971 |
| C2' |
O2' |
1.425 |
1.429 |
| C2' |
C3' |
1.527 |
1.547 |
| C2' |
H2' |
1.114 |
1.090 |
| O2' |
H1 |
0.950 |
0.967 |
| C3' |
O3' |
1.417 |
1.429 |
| C3' |
H3' |
1.115 |
1.090 |
| O3' |
H2 |
0.950 |
0.967 |
Bond Angles for CTN
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C5' |
O5' |
H5' |
111.7 |
106.8 |
| O5' |
C5' |
C4' |
111.7 |
109.5 |
| O5' |
C5' |
H5'1 |
111.4 |
109.5 |
| O5' |
C5' |
H5'2 |
111.4 |
109.5 |
| C4' |
C5' |
H5'1 |
111.4 |
109.4 |
| C4' |
C5' |
H5'2 |
111.4 |
109.4 |
| C5' |
C4' |
O4' |
114.6 |
110.4 |
| C5' |
C4' |
C3' |
104.1 |
110.5 |
| C5' |
C4' |
H4' |
107.6 |
110.3 |
| H5'1 |
C5' |
H5'2 |
99.0 |
109.4 |
| O4' |
C4' |
C3' |
102.1 |
104.8 |
| O4' |
C4' |
H4' |
109.4 |
110.4 |
| C4' |
O4' |
C1' |
108.4 |
105.3 |
| C3' |
C4' |
H4' |
119.2 |
110.3 |
| C4' |
C3' |
C2' |
105.9 |
104.1 |
| C4' |
C3' |
O3' |
105.4 |
110.5 |
| C4' |
C3' |
H3' |
115.8 |
110.6 |
| O4' |
C1' |
N1 |
111.8 |
110.4 |
| O4' |
C1' |
C2' |
105.3 |
104.9 |
| O4' |
C1' |
H1' |
112.0 |
110.3 |
| N1 |
C1' |
C2' |
113.0 |
110.4 |
| N1 |
C1' |
H1' |
104.2 |
110.4 |
| C1' |
N1 |
C6 |
122.9 |
119.8 |
| C1' |
N1 |
C2 |
120.3 |
119.9 |
| C2' |
C1' |
H1' |
110.8 |
110.3 |
| C1' |
C2' |
O2' |
110.4 |
110.8 |
| C1' |
C2' |
C3' |
103.6 |
103.9 |
| C1' |
C2' |
H2' |
115.2 |
110.4 |
| C6 |
N1 |
C2 |
116.8 |
120.3 |
| N1 |
C6 |
C5 |
123.5 |
119.3 |
| N1 |
C6 |
H6 |
118.6 |
120.3 |
| N1 |
C2 |
N3 |
121.4 |
121.1 |
| N1 |
C2 |
O2 |
122.7 |
119.4 |
| C5 |
C6 |
H6 |
117.9 |
120.4 |
| C6 |
C5 |
C4 |
116.0 |
119.0 |
| C6 |
C5 |
H5 |
121.7 |
120.5 |
| C4 |
C5 |
H5 |
122.2 |
120.5 |
| C5 |
C4 |
N3 |
121.2 |
119.6 |
| C5 |
C4 |
N4 |
121.4 |
120.2 |
| N3 |
C4 |
N4 |
117.4 |
120.2 |
| C4 |
N3 |
C2 |
121.0 |
120.7 |
| C4 |
N4 |
HN41 |
108.0 |
120.0 |
| C4 |
N4 |
HN42 |
121.3 |
120.0 |
| N3 |
C2 |
O2 |
115.9 |
119.4 |
| HN41 |
N4 |
HN42 |
108.0 |
120.0 |
| O2' |
C2' |
C3' |
116.0 |
110.5 |
| O2' |
C2' |
H2' |
102.6 |
110.5 |
| C2' |
O2' |
H1 |
110.4 |
106.8 |
| C3' |
C2' |
H2' |
109.5 |
110.5 |
| C2' |
C3' |
O3' |
113.5 |
110.5 |
| C2' |
C3' |
H3' |
107.9 |
110.5 |
| O3' |
C3' |
H3' |
108.5 |
110.4 |
| C3' |
O3' |
H2 |
105.4 |
106.8 |
Torsion Angles for CTN
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C4' |
C5' |
O5' |
H5'1 |
125.3 |
120.0 |
| C4' |
C5' |
O5' |
H5'2 |
234.7 |
240.0 |
| O5' |
C5' |
C4' |
O4' |
49.0 |
66.4 |
| O5' |
C5' |
C4' |
C3' |
159.6 |
181.9 |
| O5' |
C5' |
C4' |
H4' |
287.0 |
304.2 |
| H5'1 |
C5' |
O5' |
H5'2 |
109.5 |
120.0 |
| H5' |
O5' |
C5' |
C4' |
180.0 |
180.0 |
| H5' |
O5' |
C5' |
H5'1 |
54.8 |
60.0 |
| H5' |
O5' |
C5' |
H5'2 |
305.3 |
299.9 |
| C4' |
C5' |
O5' |
H5' |
180.0 |
180.0 |
| O5' |
C5' |
C4' |
H5'1 |
234.7 |
240.0 |
| O5' |
C5' |
C4' |
H5'2 |
125.3 |
120.0 |
| H5'1 |
C5' |
C4' |
H5'2 |
250.5 |
240.1 |
| O4' |
C4' |
C5' |
C3' |
249.4 |
244.6 |
| O4' |
C4' |
C5' |
H4' |
122.0 |
122.3 |
| C5' |
C4' |
O4' |
C1' |
148.8 |
159.4 |
| C3' |
C4' |
C5' |
H4' |
232.6 |
237.7 |
| C5' |
C4' |
C3' |
C2' |
220.5 |
217.1 |
| C5' |
C4' |
C3' |
O3' |
99.9 |
98.4 |
| C5' |
C4' |
C3' |
H3' |
340.0 |
335.8 |
| H5'1 |
C5' |
O5' |
H5' |
54.8 |
60.0 |
| O5' |
C5' |
H5'1 |
C4' |
125.4 |
120.0 |
| O5' |
C5' |
H5'1 |
H5'2 |
242.7 |
239.9 |
| C4' |
C5' |
H5'1 |
H5'2 |
117.3 |
119.9 |
| H5'1 |
C5' |
C4' |
O4' |
174.3 |
186.5 |
| H5'1 |
C5' |
C4' |
C3' |
284.9 |
301.9 |
| H5'1 |
C5' |
C4' |
H4' |
52.3 |
64.2 |
| H5'2 |
C5' |
O5' |
H5' |
305.3 |
299.9 |
| O5' |
C5' |
H5'2 |
C4' |
234.6 |
240.0 |
| O5' |
C5' |
H5'2 |
H5'1 |
117.3 |
120.1 |
| C4' |
C5' |
H5'2 |
H5'1 |
242.7 |
240.1 |
| H5'2 |
C5' |
C4' |
O4' |
283.8 |
306.4 |
| H5'2 |
C5' |
C4' |
C3' |
34.4 |
61.9 |
| H5'2 |
C5' |
C4' |
H4' |
161.8 |
184.1 |
| O4' |
C4' |
C5' |
H5'1 |
174.3 |
186.5 |
| O4' |
C4' |
C5' |
H5'2 |
283.8 |
306.4 |
| C5' |
C4' |
O4' |
C3' |
111.8 |
118.9 |
| C5' |
C4' |
O4' |
H4' |
239.0 |
237.8 |
| C3' |
C4' |
O4' |
H4' |
127.2 |
118.8 |
| O4' |
C4' |
C3' |
C2' |
340.0 |
335.9 |
| O4' |
C4' |
C3' |
O3' |
219.4 |
217.3 |
| O4' |
C4' |
C3' |
H3' |
99.6 |
94.7 |
| C4' |
O4' |
C1' |
N1 |
197.6 |
200.7 |
| C4' |
O4' |
C1' |
C2' |
320.6 |
319.6 |
| C4' |
O4' |
C1' |
H1' |
81.1 |
78.4 |
| C3' |
C4' |
C5' |
H5'1 |
284.9 |
301.9 |
| C3' |
C4' |
C5' |
H5'2 |
34.4 |
61.9 |
| C5' |
C4' |
C3' |
O4' |
240.5 |
241.1 |
| C5' |
C4' |
C3' |
H4' |
119.8 |
122.3 |
| O4' |
C4' |
C3' |
H4' |
239.4 |
241.2 |
| C3' |
C4' |
O4' |
C1' |
37.0 |
40.5 |
| C1' |
C2' |
C3' |
C4' |
358.3 |
0.1 |
| O2' |
C2' |
C3' |
C4' |
237.1 |
241.3 |
| C4' |
C3' |
C2' |
H2' |
121.7 |
118.6 |
| C2' |
C3' |
C4' |
O3' |
120.6 |
118.7 |
| C2' |
C3' |
C4' |
H3' |
240.4 |
241.3 |
| O3' |
C3' |
C4' |
H3' |
119.8 |
122.6 |
| C4' |
C3' |
O3' |
H2 |
180.0 |
298.5 |
| H4' |
C4' |
C5' |
H5'1 |
52.3 |
64.2 |
| H4' |
C4' |
C5' |
H5'2 |
161.8 |
184.1 |
| C5' |
C4' |
H4' |
O4' |
125.2 |
122.3 |
| C5' |
C4' |
H4' |
C3' |
242.0 |
237.6 |
| O4' |
C4' |
H4' |
C3' |
116.8 |
115.4 |
| H4' |
C4' |
O4' |
C1' |
269.8 |
281.7 |
| H4' |
C4' |
C3' |
C2' |
100.6 |
94.8 |
| H4' |
C4' |
C3' |
O3' |
340.0 |
336.1 |
| H4' |
C4' |
C3' |
H3' |
220.2 |
213.5 |
| C1' |
O4' |
C4' |
C3' |
37.0 |
40.5 |
| C1' |
O4' |
C4' |
H4' |
269.8 |
281.7 |
| N1 |
C1' |
O4' |
C2' |
237.0 |
241.1 |
| N1 |
C1' |
O4' |
H1' |
116.5 |
122.3 |
| O4' |
C1' |
N1 |
C6 |
47.8 |
232.1 |
| O4' |
C1' |
N1 |
C2 |
227.5 |
52.0 |
| C2' |
C1' |
O4' |
H1' |
239.5 |
241.2 |
| O4' |
C1' |
C2' |
O2' |
148.8 |
142.5 |
| O4' |
C1' |
C2' |
C3' |
24.0 |
23.8 |
| O4' |
C1' |
C2' |
H2' |
264.4 |
265.3 |
| O4' |
C1' |
N1 |
C2' |
118.6 |
115.5 |
| O4' |
C1' |
N1 |
H1' |
238.9 |
237.8 |
| C2' |
C1' |
N1 |
H1' |
120.3 |
122.2 |
| N1 |
C1' |
C2' |
O2' |
271.1 |
261.5 |
| N1 |
C1' |
C2' |
C3' |
146.2 |
142.7 |
| N1 |
C1' |
C2' |
H2' |
26.7 |
24.2 |
| C6 |
N1 |
C1' |
C2 |
180.3 |
180.0 |
| C1' |
N1 |
C6 |
C5 |
179.8 |
179.7 |
| C1' |
N1 |
C6 |
H6 |
359.8 |
360.0 |
| C1' |
N1 |
C2 |
N3 |
180.2 |
180.0 |
| C1' |
N1 |
C2 |
O2 |
0.2 |
360.0 |
| C4' |
C3' |
C2' |
C1' |
358.3 |
0.1 |
| O4' |
C1' |
C2' |
N1 |
237.8 |
241.1 |
| O4' |
C1' |
C2' |
H1' |
121.3 |
118.8 |
| N1 |
C1' |
C2' |
H1' |
243.5 |
237.7 |
| C2' |
C1' |
N1 |
C6 |
289.2 |
116.5 |
| C2' |
C1' |
N1 |
C2 |
108.9 |
296.5 |
| O2' |
C2' |
C1' |
C3' |
124.9 |
118.7 |
| O2' |
C2' |
C1' |
H2' |
244.4 |
237.3 |
| C1' |
C2' |
O2' |
H1 |
180.0 |
183.8 |
| C3' |
C2' |
C1' |
H2' |
119.6 |
118.6 |
| C1' |
C2' |
C3' |
O3' |
113.4 |
118.8 |
| C1' |
C2' |
C3' |
H3' |
233.6 |
241.4 |
| O4' |
C1' |
H1' |
N1 |
121.0 |
122.3 |
| O4' |
C1' |
H1' |
C2' |
242.7 |
244.5 |
| N1 |
C1' |
H1' |
C2' |
121.8 |
122.3 |
| H1' |
C1' |
N1 |
C6 |
168.9 |
354.3 |
| H1' |
C1' |
N1 |
C2 |
348.6 |
174.3 |
| H1' |
C1' |
C2' |
O2' |
27.5 |
23.7 |
| H1' |
C1' |
C2' |
C3' |
262.7 |
265.0 |
| H1' |
C1' |
C2' |
H2' |
143.1 |
146.4 |
| C6 |
N1 |
C1' |
C2' |
289.2 |
116.5 |
| C6 |
N1 |
C1' |
H1' |
168.9 |
354.3 |
| C1' |
N1 |
C6 |
C2 |
179.7 |
180.0 |
| C6 |
N1 |
C2 |
N3 |
359.9 |
360.0 |
| C6 |
N1 |
C2 |
O2 |
179.9 |
180.0 |
| C5 |
C6 |
N1 |
H6 |
180.0 |
179.7 |
| N1 |
C6 |
C5 |
C4 |
359.9 |
0.5 |
| N1 |
C6 |
C5 |
H5 |
179.9 |
180.0 |
| C2 |
N1 |
C1' |
C2' |
108.9 |
296.5 |
| C2 |
N1 |
C1' |
H1' |
348.6 |
174.3 |
| C1' |
N1 |
C2 |
C6 |
180.3 |
180.0 |
| C2 |
N1 |
C6 |
C5 |
0.1 |
359.7 |
| C2 |
N1 |
C6 |
H6 |
180.1 |
180.0 |
| C4 |
N3 |
C2 |
N1 |
0.2 |
0.0 |
| N3 |
C2 |
N1 |
O2 |
179.9 |
180.0 |
| C5 |
C6 |
N1 |
C2 |
0.1 |
359.7 |
| N1 |
C6 |
C5 |
H6 |
180.0 |
180.3 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
180.5 |
| C6 |
C5 |
C4 |
N3 |
0.2 |
359.5 |
| C6 |
C5 |
C4 |
N4 |
180.2 |
179.7 |
| H6 |
C6 |
N1 |
C2 |
180.1 |
180.0 |
| N1 |
C6 |
H6 |
C5 |
180.0 |
179.7 |
| H6 |
C6 |
C5 |
C4 |
179.9 |
180.3 |
| H6 |
C6 |
C5 |
H5 |
359.9 |
359.7 |
| C4 |
C5 |
C6 |
H6 |
179.9 |
180.3 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
179.5 |
| N3 |
C4 |
C5 |
N4 |
180.0 |
179.8 |
| C5 |
C4 |
N3 |
C2 |
359.7 |
0.2 |
| C5 |
C4 |
N4 |
HN41 |
54.7 |
179.7 |
| C5 |
C4 |
N4 |
HN42 |
180.0 |
359.5 |
| H5 |
C5 |
C6 |
H6 |
359.9 |
359.7 |
| C6 |
C5 |
H5 |
C4 |
180.0 |
180.5 |
| H5 |
C5 |
C4 |
N3 |
180.2 |
180.0 |
| H5 |
C5 |
C4 |
N4 |
0.2 |
0.3 |
| N1 |
C2 |
N3 |
C4 |
0.2 |
0.0 |
| N3 |
C4 |
C5 |
H5 |
180.2 |
180.0 |
| C5 |
C4 |
N3 |
N4 |
180.0 |
180.2 |
| N3 |
C4 |
N4 |
HN41 |
234.7 |
359.9 |
| N3 |
C4 |
N4 |
HN42 |
0.0 |
179.7 |
| C4 |
N3 |
C2 |
O2 |
180.2 |
180.0 |
| N4 |
C4 |
C5 |
H5 |
0.2 |
0.3 |
| C5 |
C4 |
N4 |
N3 |
180.0 |
179.8 |
| N4 |
C4 |
N3 |
C2 |
179.7 |
180.0 |
| HN41 |
N4 |
C4 |
HN42 |
234.7 |
180.2 |
| N1 |
C2 |
N3 |
O2 |
180.1 |
180.0 |
| C2 |
N3 |
C4 |
N4 |
179.7 |
180.0 |
| N1 |
C2 |
O2 |
N3 |
179.9 |
180.0 |
| C4 |
N4 |
HN41 |
HN42 |
132.9 |
179.8 |
| C4 |
N4 |
HN42 |
HN41 |
234.7 |
180.2 |
| C4' |
C3' |
C2' |
O2' |
237.1 |
241.3 |
| O2' |
C2' |
C1' |
H1' |
27.5 |
23.7 |
| C1' |
C2' |
O2' |
C3' |
242.5 |
245.3 |
| C1' |
C2' |
O2' |
H2' |
123.3 |
122.6 |
| C3' |
C2' |
O2' |
H2' |
240.7 |
237.3 |
| O2' |
C2' |
C3' |
O3' |
352.2 |
359.9 |
| O2' |
C2' |
C3' |
H3' |
112.5 |
122.5 |
| C2' |
C3' |
C4' |
H4' |
100.6 |
94.8 |
| C4' |
C3' |
C2' |
O3' |
244.9 |
241.3 |
| C4' |
C3' |
C2' |
H3' |
124.6 |
118.7 |
| C3' |
C2' |
C1' |
H1' |
262.7 |
265.0 |
| C1' |
C2' |
C3' |
O2' |
121.1 |
118.9 |
| C1' |
C2' |
C3' |
H2' |
236.6 |
241.6 |
| O2' |
C2' |
C3' |
H2' |
115.4 |
122.7 |
| C3' |
C2' |
O2' |
H1 |
297.5 |
298.5 |
| O3' |
C3' |
C2' |
H3' |
239.7 |
237.4 |
| C2' |
C3' |
O3' |
H2 |
64.6 |
183.8 |
| H2' |
C2' |
C1' |
H1' |
143.1 |
146.4 |
| C1' |
C2' |
H2' |
O2' |
240.0 |
237.1 |
| C1' |
C2' |
H2' |
C3' |
116.3 |
114.4 |
| O2' |
C2' |
H2' |
C3' |
236.3 |
237.3 |
| H2' |
C2' |
O2' |
H1 |
56.7 |
61.2 |
| H2' |
C2' |
C3' |
O3' |
236.8 |
237.3 |
| H2' |
C2' |
C3' |
H3' |
357.1 |
359.8 |
| H1 |
O2' |
C2' |
C3' |
297.5 |
298.5 |
| H1 |
O2' |
C2' |
H2' |
56.7 |
61.2 |
| O3' |
C3' |
C4' |
H4' |
340.0 |
336.1 |
| C4' |
C3' |
O3' |
C2' |
115.4 |
114.7 |
| C4' |
C3' |
O3' |
H3' |
235.4 |
237.3 |
| O3' |
C3' |
C2' |
H2' |
236.8 |
237.3 |
| C2' |
C3' |
O3' |
H3' |
120.0 |
122.6 |
| H3' |
C3' |
C4' |
H4' |
220.2 |
213.5 |
| C4' |
C3' |
H3' |
C2' |
241.6 |
245.3 |
| C4' |
C3' |
H3' |
O3' |
118.1 |
122.6 |
| H3' |
C3' |
C2' |
H2' |
357.1 |
359.8 |
| C2' |
C3' |
H3' |
O3' |
236.6 |
237.4 |
| H3' |
C3' |
O3' |
H2 |
304.6 |
61.2 |
| H2 |
O3' |
C3' |
H3' |
304.6 |
61.2 |