PDB Chemical Component C25 (obsoleted)

Ideal Model

Chemical Description

Name CYTIDINE-5'-MONOPHOSPHATE
Formula C9 H14 N3 O8 P
Formal charge 0
Molecular weight 323.197 g/mol
Component type RNA LINKING
Nonstandard Parent Id C

Chemical features

Atom count 35
Chiral atom count 4
Chiral atoms C4' C3' C2' C1'
Observed leaving atoms OP3
Bond count 36
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5'-cytidylic acid
Systematic name (OpenEye OEToolkits) [(2R,3S,4R,5R)-5-(4-amino-2-oxo-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O
SMILES (CACTVS) NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O
Stereo SMILES (OpenEye) C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O
InChI descriptor InChI=1/C9H14N3O8P/c10-5-1-2-12(9(15)11-5)8-7(14)6(13)4(20-8)3-19-21(16,17)18/h1-2,4,6-8,13-14H,3H2,(H2,10,11,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1/f/h16-17H,10H2
InChIKey descriptor IERHLVCPSMICTF-KWRCWRNTDD

Status Information

Last modified 2009-01-07
Created 2002-08-23
Release status OBS
Replaced by C5P
Processing site RCSB