PDB Chemical Component BG6

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for BG6

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.536	1.530
C1	O1	1.385	1.429
C1	O5	1.438	1.426
C1	H1	1.114	1.090
C2	C3	1.530	1.532
C2	O2	1.420	1.429
C2	H2	1.116	1.090
O1	HO1	0.951	0.967
O5	C5	1.446	1.425
C3	C4	1.531	1.533
C3	O3	1.424	1.428
C3	H3	1.114	1.089
O2	HO2	0.950	0.966
C4	C5	1.531	1.531
C4	O4	1.421	1.429
C4	H4	1.116	1.090
O3	HO3	0.950	0.967
C5	C6	1.520	1.528
C5	H5	1.115	1.090
O4	HO4	0.951	0.967
C6	O6	1.441	1.429
C6	H61	1.115	1.090
C6	H62	1.115	1.090
O6	P	1.618	1.610
P	O1P	1.484	1.610
P	O2P	1.483	1.609
P	O3P	1.475	1.480
O1P	H1O1	0.950	0.967
O2P	H2O2	0.950	0.966

Bond Angles for BG6

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1	109.3	109.4
C2	C1	O5	110.6	109.8
C2	C1	H1	108.2	109.4
C1	C2	C3	110.7	109.0
C1	C2	O2	109.9	109.6
C1	C2	H2	108.6	109.6
O1	C1	O5	107.3	109.4
O1	C1	H1	111.4	109.4
C1	O1	HO1	109.3	106.8
O5	C1	H1	110.1	109.4
C1	O5	C5	113.2	107.6
C3	C2	O2	110.2	109.6
C3	C2	H2	108.3	109.5
C2	C3	C4	108.9	108.6
C2	C3	O3	109.9	109.7
C2	C3	H3	109.8	109.7
O2	C2	H2	109.1	109.5
C2	O2	HO2	109.9	106.8
O5	C5	C4	110.3	109.8
O5	C5	C6	107.3	109.5
O5	C5	H5	111.6	109.4
C4	C3	O3	110.2	109.6
C4	C3	H3	109.6	109.6
C3	C4	C5	109.7	109.0
C3	C4	O4	110.3	109.6
C3	C4	H4	108.9	109.5
O3	C3	H3	108.5	109.6
C3	O3	HO3	110.0	106.8
C5	C4	O4	109.7	109.6
C5	C4	H4	109.4	109.5
C4	C5	C6	112.8	109.4
C4	C5	H5	105.9	109.4
O4	C4	H4	108.9	109.5
C4	O4	HO4	110.2	106.9
C6	C5	H5	109.0	109.4
C5	C6	O6	109.7	109.5
C5	C6	H61	112.2	109.6
C5	C6	H62	112.1	109.5
O6	C6	H61	112.1	109.5
O6	C6	H62	112.1	109.4
C6	O6	P	122.1	106.8
H61	C6	H62	98.3	109.4
O6	P	O1P	104.8	109.5
O6	P	O2P	98.8	109.5
O6	P	O3P	103.5	109.5
O1P	P	O2P	117.8	109.5
O1P	P	O3P	115.4	109.5
P	O1P	H1O1	104.7	106.8
O2P	P	O3P	113.4	109.4
P	O2P	H2O2	98.8	106.8

Torsion Angles for BG6

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	C2	O5	117.9	120.1
O1	C1	C2	H1	238.5	240.2
C2	C1	O1	HO1	180.0	179.9
O5	C1	C2	H1	120.7	120.1
C2	C1	O5	C5	301.8	292.4
C3	C2	C1	O2	238.0	240.1
C3	C2	C1	H2	118.7	119.8
C1	C2	C3	C4	304.9	306.2
C1	C2	C3	O3	184.1	186.4
C1	C2	C3	H3	64.8	66.0
O2	C2	C1	H2	240.7	239.7
C1	C2	O2	HO2	180.0	60.4
C2	C1	O1	O5	240.0	239.7
C2	C1	O1	H1	119.5	119.8
O1	C1	C2	C3	173.5	181.4
O1	C1	C2	O2	295.5	301.3
O1	C1	C2	H2	54.7	61.6
O5	C1	O1	H1	239.4	240.1
O1	C1	O5	C5	182.8	172.3
C2	C1	O5	O1	119.1	120.1
C2	C1	O5	H1	240.5	239.9
O5	C1	C2	C3	55.6	61.3
O5	C1	C2	O2	177.6	181.2
O5	C1	C2	H2	296.8	301.5
O1	C1	O5	H1	121.4	119.8
O5	C1	O1	HO1	300.0	300.2
C1	O5	C5	C4	59.8	67.5
C1	O5	C5	C6	183.1	187.6
C1	O5	C5	H5	302.3	307.5
C2	C1	H1	O1	239.9	240.2
C2	C1	H1	O5	121.0	120.3
H1	C1	C2	C3	294.9	301.2
H1	C1	C2	O2	56.9	61.1
H1	C1	C2	H2	176.2	181.4
O1	C1	H1	O5	241.1	240.1
H1	C1	O1	HO1	60.5	60.0
H1	C1	O5	C5	61.4	52.5
C3	C2	C1	O1	173.5	181.4
C3	C2	C1	O5	55.6	61.3
C3	C2	C1	H1	294.9	301.2
C1	C2	C3	O2	121.8	119.9
C1	C2	C3	H2	241.1	240.1
O2	C2	C3	H2	119.3	120.2
C3	C2	O2	HO2	302.3	179.9
C4	C3	C2	O3	120.8	119.8
C4	C3	C2	H3	240.1	240.2
C2	C3	C4	C5	56.2	53.7
C2	C3	C4	O4	177.1	173.7
C2	C3	C4	H4	296.5	293.9
O3	C3	C2	H3	119.3	120.4
C2	C3	O3	HO3	180.0	299.2
O2	C2	C1	O1	295.5	301.3
O2	C2	C1	O5	177.6	181.2
O2	C2	C1	H1	56.9	61.1
C1	C2	O2	C3	237.7	240.5
C1	C2	O2	H2	118.9	120.3
C3	C2	O2	H2	241.2	239.8
O2	C2	C3	C4	183.1	186.3
O2	C2	C3	O3	62.3	66.5
O2	C2	C3	H3	303.0	306.1
H2	C2	C1	O1	54.7	61.6
H2	C2	C1	O5	296.8	301.5
H2	C2	C1	H1	176.2	181.4
C1	C2	H2	C3	120.3	119.5
C1	C2	H2	O2	240.2	239.7
C3	C2	H2	O2	119.9	120.2
H2	C2	C3	C4	63.8	66.1
H2	C2	C3	O3	303.0	306.3
H2	C2	C3	H3	183.7	185.9
H2	C2	O2	HO2	61.1	300.1
HO1	O1	C1	O5	300.0	300.2
HO1	O1	C1	H1	60.5	60.0
C5	O5	C1	H1	61.4	52.5
C3	C4	C5	O5	301.8	298.8
O5	C5	C4	O4	180.6	178.8
O5	C5	C4	H4	61.2	58.7
C4	C5	O5	C6	236.7	239.9
C4	C5	O5	H5	117.4	120.0
C6	C5	O5	H5	240.7	240.1
O5	C5	C6	O6	51.1	60.0
O5	C5	C6	H61	176.3	180.1
O5	C5	C6	H62	285.8	300.0
C4	C3	C2	O2	183.1	186.3
C4	C3	C2	H2	63.8	66.1
C2	C3	C4	O3	239.4	240.1
C2	C3	C4	H3	120.1	119.8
O5	C5	C4	C3	301.8	298.8
O3	C3	C4	H3	240.7	239.7
C4	C3	O3	HO3	60.0	180.0
C5	C4	C3	O4	239.1	240.0
C5	C4	C3	H4	119.7	119.8
C3	C4	C5	C6	181.9	178.6
C3	C4	C5	H5	62.7	58.9
O4	C4	C3	H4	240.6	239.8
C3	C4	O4	HO4	180.0	60.4
O3	C3	C2	O2	62.3	66.5
O3	C3	C2	H2	303.0	306.3
C2	C3	O3	C4	120.0	119.2
C2	C3	O3	H3	239.9	239.6
C4	C3	O3	H3	119.9	120.3
O3	C3	C4	C5	176.9	173.6
O3	C3	C4	O4	297.8	293.6
O3	C3	C4	H4	57.2	53.8
H3	C3	C2	O2	303.0	306.1
H3	C3	C2	H2	183.7	185.9
C2	C3	H3	C4	240.5	240.8
C2	C3	H3	O3	120.2	120.5
C4	C3	H3	O3	239.7	239.7
H3	C3	C4	C5	296.2	293.9
H3	C3	C4	O4	57.1	53.9
H3	C3	C4	H4	176.5	174.1
H3	C3	O3	HO3	300.0	59.6
HO2	O2	C2	H2	61.1	300.1
O5	C5	C4	C6	120.0	120.2
O5	C5	C4	H5	239.1	239.9
C5	C4	C3	O3	176.9	173.6
C5	C4	C3	H3	296.2	293.9
C3	C4	C5	O4	121.2	120.0
C3	C4	C5	H4	240.6	240.1
O4	C4	C5	H4	119.3	120.1
C5	C4	O4	HO4	300.9	180.0
C6	C5	C4	H5	119.1	119.8
C4	C5	C6	O6	172.8	180.3
C4	C5	C6	H61	298.1	300.4
C4	C5	C6	H62	47.6	60.4
O4	C4	C3	O3	297.8	293.6
O4	C4	C3	H3	57.1	53.9
C3	C4	O4	C5	239.1	240.4
C3	C4	O4	H4	119.4	120.2
C5	C4	O4	H4	240.3	239.8
O4	C4	C5	C6	60.6	58.6
O4	C4	C5	H5	301.5	298.9
H4	C4	C3	O3	57.2	53.8
H4	C4	C3	H3	176.5	174.1
C3	C4	H4	C5	119.9	119.6
C3	C4	H4	O4	239.8	239.8
C5	C4	H4	O4	119.8	120.2
H4	C4	C5	C6	301.3	298.5
H4	C4	C5	H5	182.1	178.7
H4	C4	O4	HO4	60.6	300.1
HO3	O3	C3	H3	300.0	59.6
O5	C5	C6	C4	238.3	239.7
O5	C5	C6	H5	121.0	119.9
C6	C5	C4	O4	60.6	58.6
C6	C5	C4	H4	301.3	298.5
C4	C5	C6	H5	242.7	240.2
O6	C6	C5	H61	234.7	239.9
O6	C6	C5	H62	125.2	119.9
C5	C6	O6	P	122.5	180.0
H61	C6	C5	H62	250.5	240.0
O5	C5	H5	C4	120.1	120.3
O5	C5	H5	C6	241.7	240.0
H5	C5	C4	O4	301.5	298.9
H5	C5	C4	H4	182.1	178.7
C4	C5	H5	C6	121.6	119.8
H5	C5	C6	O6	290.1	300.1
H5	C5	C6	H61	55.4	60.2
H5	C5	C6	H62	164.9	180.1
HO4	O4	C4	H4	60.6	300.1
O6	C6	C5	H5	290.1	300.1
C5	C6	O6	H61	125.3	120.1
C5	C6	O6	H62	234.7	240.0
H61	C6	O6	H62	109.4	119.9
C6	O6	P	O1P	328.5	180.0
C6	O6	P	O2P	206.6	300.0
C6	O6	P	O3P	89.8	60.0
H61	C6	C5	H5	55.4	60.2
C5	C6	H61	O6	236.1	239.9
C5	C6	H61	H62	118.1	120.0
O6	C6	H61	H62	242.0	240.1
H61	C6	O6	P	357.2	59.9
H62	C6	C5	H5	164.9	180.1
C5	C6	H62	O6	123.9	120.0
C5	C6	H62	H61	241.9	239.9
O6	C6	H62	H61	118.0	119.9
H62	C6	O6	P	247.8	300.0
P	O6	C6	H61	357.2	59.9
P	O6	C6	H62	247.8	300.0
O1P	P	O6	O2P	121.9	240.0
O1P	P	O6	O3P	238.7	120.0
O6	P	O1P	H1O1	179.9	180.0
O2P	P	O6	O3P	116.8	240.0
O6	P	O2P	H2O2	180.1	300.0
O6	P	O1P	O2P	251.5	120.0
O6	P	O1P	O3P	113.1	240.0
O2P	P	O1P	O3P	221.6	120.0
O1P	P	O2P	H2O2	68.2	60.0
O6	P	O2P	O1P	111.9	240.0
O6	P	O2P	O3P	251.1	120.0
O1P	P	O2P	O3P	139.2	240.0
O2P	P	O1P	H1O1	288.4	60.0
O6	P	O3P	O1P	246.2	120.0
O6	P	O3P	O2P	106.0	240.0
O1P	P	O3P	O2P	219.8	120.0
O3P	P	O1P	H1O1	66.8	300.1
O3P	P	O2P	H2O2	289.0	180.0
H1O1	O1P	P	O2P	288.4	60.0
H1O1	O1P	P	O3P	66.8	300.1
H2O2	O2P	P	O3P	289.0	180.0