PDB Chemical Component ATP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for ATP

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
PG O1G 1.494 1.480
PG O2G 1.483 1.610
PG O3G 1.473 1.609
PG O3B 1.595 1.610
O2G HOG2 0.950 0.968
O3G HOG3 0.950 0.967
PB O1B 1.422 1.479
PB O2B 1.451 1.609
PB O3B 1.589 1.610
PB O3A 1.676 1.610
O2B HOB2 0.950 0.967
PA O1A 1.441 1.480
PA O2A 1.464 1.610
PA O3A 1.564 1.609
PA O5' 1.451 1.610
O2A HOA2 0.951 0.966
O5' C5' 1.250 1.428
C5' C4' 1.447 1.530
C5' H5'1 1.115 1.090
C5' H5'2 1.115 1.089
C4' O4' 1.443 1.444
C4' C3' 1.494 1.544
C4' H4' 1.116 1.090
O4' C1' 1.455 1.443
C3' O3' 1.412 1.430
C3' C2' 1.533 1.547
C3' H3' 1.115 1.090
O3' HO3' 0.950 0.966
C2' O2' 1.411 1.429
C2' C1' 1.562 1.544
C2' H2' 1.114 1.090
O2' HO2' 0.950 0.966
C1' N9 1.470 1.464
C1' H1' 1.115 1.090
N9 C8 1.398 1.363
N9 C4 1.343 1.372
C8 N7 1.297 1.301
C8 H8 1.103 1.080
N7 C5 1.393 1.355
C5 C6 1.424 1.405
C5 C4 1.362 1.404
C6 N6 1.322 1.384
C6 N1 1.366 1.329
N6 HN61 1.020 0.970
N6 HN62 1.019 0.970
N1 C2 1.332 1.320
C2 N3 1.334 1.317
C2 H2 1.104 1.080
N3 C4 1.401 1.329

Bond Angles for ATP

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1G PG O2G 114.4 109.5
O1G PG O3G 112.3 109.5
O1G PG O3B 109.6 109.5
O2G PG O3G 113.5 109.4
O2G PG O3B 102.0 109.5
PG O2G HOG2 114.3 106.8
O3G PG O3B 103.9 109.5
PG O3G HOG3 112.3 106.8
PG O3B PB 133.8 106.8
O1B PB O2B 121.6 109.5
O1B PB O3B 115.7 109.5
O1B PB O3A 94.5 109.4
O2B PB O3B 119.2 109.5
O2B PB O3A 102.2 109.5
PB O2B HOB2 121.6 106.7
O3B PB O3A 91.8 109.5
PB O3A PA 130.1 106.8
O1A PA O2A 122.3 109.5
O1A PA O3A 117.6 109.4
O1A PA O5' 82.7 109.4
O2A PA O3A 118.3 109.5
O2A PA O5' 103.6 109.5
PA O2A HOA2 122.3 106.8
O3A PA O5' 97.0 109.5
PA O5' C5' 158.3 106.8
O5' C5' C4' 149.7 109.5
O5' C5' H5'1 98.9 109.5
O5' C5' H5'2 98.9 109.5
C4' C5' H5'1 98.9 109.4
C4' C5' H5'2 98.9 109.5
C5' C4' O4' 99.5 110.4
C5' C4' C3' 87.8 110.5
C5' C4' H4' 127.2 110.3
H5'1 C5' H5'2 107.6 109.5
O4' C4' C3' 109.2 104.8
O4' C4' H4' 110.4 110.4
C4' O4' C1' 110.0 105.3
C3' C4' H4' 119.4 110.4
C4' C3' O3' 115.8 110.5
C4' C3' C2' 103.4 104.1
C4' C3' H3' 112.3 110.5
O4' C1' C2' 105.7 104.9
O4' C1' N9 106.3 110.4
O4' C1' H1' 115.5 110.4
O3' C3' C2' 116.6 110.6
O3' C3' H3' 97.7 110.4
C3' O3' HO3' 115.8 106.8
C2' C3' H3' 111.4 110.6
C3' C2' O2' 108.5 110.5
C3' C2' C1' 105.1 104.0
C3' C2' H2' 113.1 110.5
O2' C2' C1' 110.1 110.8
O2' C2' H2' 108.3 110.5
C2' O2' HO2' 108.6 106.8
C1' C2' H2' 111.6 110.4
C2' C1' N9 114.0 110.4
C2' C1' H1' 108.1 110.3
N9 C1' H1' 107.5 110.3
C1' N9 C8 130.0 126.3
C1' N9 C4 124.6 126.4
C8 N9 C4 105.4 107.4
N9 C8 N7 114.0 110.0
N9 C8 H8 126.3 125.0
N9 C4 C5 106.3 106.1
N9 C4 N3 126.1 134.9
N7 C8 H8 119.7 125.0
C8 N7 C5 102.3 109.4
N7 C5 C6 132.5 134.7
N7 C5 C4 112.0 107.1
C6 C5 C4 115.5 118.2
C5 C6 N6 122.1 120.8
C5 C6 N1 118.2 118.5
C5 C4 N3 127.6 119.1
N6 C6 N1 119.6 120.8
C6 N6 HN61 122.1 120.1
C6 N6 HN62 107.7 120.0
C6 N1 C2 120.4 121.2
HN61 N6 HN62 107.8 119.9
N1 C2 N3 127.3 122.4
N1 C2 H2 116.3 118.8
N3 C2 H2 116.4 118.8
C2 N3 C4 111.0 120.6

Torsion Angles for ATP

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2G PG O1G O3G 228.7 120.0
O2G PG O1G O3B 113.8 240.0
O1G PG O2G HOG2 180.0 300.0
O3G PG O1G O3B 245.0 120.0
O1G PG O3G HOG3 180.0 180.0
O1G PG O3B PB 11.8 60.0
O1G PG O2G O3G 130.7 240.0
O1G PG O2G O3B 241.8 120.0
O3G PG O2G O3B 111.1 240.0
O2G PG O3G HOG3 311.6 60.0
O2G PG O3B PB 250.2 180.0
O1G PG O3G O2G 228.3 120.0
O1G PG O3G O3B 118.4 239.9
O2G PG O3G O3B 250.1 120.0
O3G PG O2G HOG2 49.3 60.0
O3G PG O3B PB 132.0 300.0
O1G PG O3B O2G 121.5 240.0
O1G PG O3B O3G 239.8 120.0
O2G PG O3B O3G 118.2 240.0
O3B PG O2G HOG2 298.2 180.0
O3B PG O3G HOG3 61.6 300.1
O1B PB O3B PG 193.2 300.0
O2B PB O3B PG 352.3 60.0
PG O3B PB O3A 97.4 180.1
HOG2 O2G PG O3G 49.3 60.0
HOG2 O2G PG O3B 298.2 180.0
HOG3 O3G PG O3B 61.6 300.1
PG O3B PB O1B 193.2 300.0
O2B PB O1B O3B 201.5 240.0
O2B PB O1B O3A 107.3 120.1
O1B PB O2B HOB2 180.0 180.0
O3B PB O1B O3A 265.9 240.1
O1B PB O3A PA 112.1 60.0
PG O3B PB O2B 352.3 60.0
O1B PB O2B O3B 157.8 120.0
O1B PB O2B O3A 256.9 240.0
O3B PB O2B O3A 99.1 120.0
O2B PB O3A PA 348.4 300.0
O1B PB O3B O2B 200.9 240.0
O1B PB O3B O3A 95.8 119.9
O2B PB O3B O3A 254.9 239.9
O3B PB O2B HOB2 22.2 60.0
O3B PB O3A PA 228.0 180.0
O1B PB O3A O2B 123.7 120.0
O1B PB O3A O3B 244.1 240.1
O2B PB O3A O3B 120.4 120.0
O3A PB O2B HOB2 283.2 300.0
O1A PA O3A PB 93.5 60.0
O2A PA O3A PB 288.5 300.0
PB O3A PA O5' 178.9 179.9
HOB2 O2B PB O3B 22.2 60.0
HOB2 O2B PB O3A 283.2 300.0
PB O3A PA O1A 93.5 60.0
O2A PA O1A O3A 164.4 120.0
O2A PA O1A O5' 258.5 240.0
O1A PA O2A HOA2 180.0 179.9
O3A PA O1A O5' 94.1 120.0
O1A PA O5' C5' 173.2 300.0
PB O3A PA O2A 288.5 300.0
O1A PA O2A O3A 195.7 240.0
O1A PA O2A O5' 89.9 120.0
O3A PA O2A O5' 254.2 240.0
O2A PA O5' C5' 294.7 60.0
O1A PA O3A O2A 165.0 120.0
O1A PA O3A O5' 274.6 240.0
O2A PA O3A O5' 109.6 120.0
O3A PA O2A HOA2 344.2 299.9
O3A PA O5' C5' 56.2 180.0
O1A PA O5' O2A 238.4 240.0
O1A PA O5' O3A 117.0 120.0
O2A PA O5' O3A 238.6 240.0
O5' PA O2A HOA2 90.1 60.0
PA O5' C5' C4' 59.6 180.0
PA O5' C5' H5'1 184.9 60.1
PA O5' C5' H5'2 294.4 300.0
HOA2 O2A PA O3A 344.2 299.9
HOA2 O2A PA O5' 90.1 60.0
C4' C5' O5' H5'1 234.8 119.9
C4' C5' O5' H5'2 125.3 240.0
O5' C5' C4' O4' 64.4 61.5
O5' C5' C4' C3' 173.5 176.9
O5' C5' C4' H4' 299.5 299.2
H5'1 C5' O5' H5'2 250.5 120.1
O5' C5' C4' H5'1 125.2 240.0
O5' C5' C4' H5'2 234.7 120.0
H5'1 C5' C4' H5'2 109.5 240.0
O4' C4' C5' C3' 250.9 244.6
O4' C4' C5' H4' 124.9 122.2
C5' C4' O4' C1' 105.4 159.5
C3' C4' C5' H4' 234.0 237.7
C5' C4' C3' O3' 107.4 98.3
C5' C4' C3' C2' 236.2 217.1
C5' C4' C3' H3' 356.4 335.8
O5' C5' H5'1 C4' 204.7 120.0
O5' C5' H5'1 H5'2 102.3 239.9
C4' C5' H5'1 H5'2 257.7 119.9
H5'1 C5' C4' O4' 299.2 181.5
H5'1 C5' C4' C3' 48.3 296.9
H5'1 C5' C4' H4' 174.3 59.2
O5' C5' H5'2 C4' 155.3 240.0
O5' C5' H5'2 H5'1 257.7 120.1
C4' C5' H5'2 H5'1 102.3 240.1
H5'2 C5' C4' O4' 189.7 301.4
H5'2 C5' C4' C3' 298.7 56.8
H5'2 C5' C4' H4' 64.8 179.2
O4' C4' C5' H5'1 299.2 181.5
O4' C4' C5' H5'2 189.7 301.4
C5' C4' O4' C3' 91.0 119.0
C5' C4' O4' H4' 224.2 237.8
C3' C4' O4' H4' 133.3 118.8
O4' C4' C3' O3' 206.7 217.2
O4' C4' C3' C2' 335.5 335.9
O4' C4' C3' H3' 95.7 94.7
C4' O4' C1' C2' 2.0 319.6
C4' O4' C1' N9 240.6 200.6
C4' O4' C1' H1' 121.5 78.4
C3' C4' C5' H5'1 48.3 296.9
C3' C4' C5' H5'2 298.7 56.8
C5' C4' C3' O4' 260.7 241.1
C5' C4' C3' H4' 132.3 122.3
O4' C4' C3' H4' 231.6 241.2
C3' C4' O4' C1' 14.4 40.5
O3' C3' C4' C2' 231.2 241.3
O3' C3' C4' H3' 111.0 122.5
C4' C3' O3' HO3' 179.9 180.0
C2' C3' C4' H3' 239.8 241.2
C4' C3' C2' O2' 266.9 241.2
C4' C3' C2' C1' 24.7 0.2
C4' C3' C2' H2' 146.7 118.6
H4' C4' C5' H5'1 174.3 59.2
H4' C4' C5' H5'2 64.8 179.2
C5' C4' H4' O4' 120.3 122.2
C5' C4' H4' C3' 248.1 237.6
O4' C4' H4' C3' 127.8 115.4
H4' C4' O4' C1' 241.1 281.6
H4' C4' C3' O3' 335.1 336.0
H4' C4' C3' C2' 103.9 94.8
H4' C4' C3' H3' 224.1 213.5
C1' O4' C4' C3' 14.4 40.5
C1' O4' C4' H4' 241.1 281.6
C3' C2' C1' O4' 343.1 23.8
O2' C2' C1' O4' 99.8 142.5
O4' C1' C2' H2' 220.1 265.3
C2' C1' O4' N9 121.5 119.0
C2' C1' O4' H1' 240.6 241.2
N9 C1' O4' H1' 119.1 122.2
O4' C1' N9 C8 25.0 27.1
O4' C1' N9 C4 205.9 207.0
O3' C3' C4' H4' 335.1 336.0
C4' C3' O3' C2' 122.1 114.8
C4' C3' O3' H3' 240.7 237.5
C2' C3' O3' H3' 118.6 122.7
O3' C3' C2' O2' 35.2 359.9
O3' C3' C2' C1' 153.0 118.9
O3' C3' C2' H2' 275.0 237.4
C2' C3' C4' H4' 103.9 94.8
C4' C3' C2' O3' 231.7 241.3
C4' C3' C2' H3' 120.8 118.7
O4' C1' C2' C3' 343.1 23.8
O3' C3' C2' H3' 249.1 237.4
C2' C3' O3' HO3' 57.9 65.3
O2' C2' C3' C1' 242.2 241.0
O2' C2' C3' H2' 120.2 122.6
C3' C2' O2' HO2' 180.0 298.5
C1' C2' C3' H2' 238.0 241.5
C3' C2' C1' N9 99.4 142.8
C3' C2' C1' H1' 218.9 264.9
H3' C3' C4' H4' 224.1 213.5
C4' C3' H3' O3' 122.0 122.6
C4' C3' H3' C2' 244.5 245.3
O3' C3' H3' C2' 122.6 122.7
H3' C3' O3' HO3' 299.3 302.6
H3' C3' C2' O2' 146.1 122.5
H3' C3' C2' C1' 263.9 241.5
H3' C3' C2' H2' 25.9 360.0
HO3' O3' C3' C2' 57.9 65.3
HO3' O3' C3' H3' 299.3 302.6
O4' C1' C2' O2' 99.8 142.5
O2' C2' C3' H3' 146.1 122.5
C3' C2' O2' C1' 114.5 114.7
C3' C2' O2' H2' 236.8 237.4
C1' C2' O2' H2' 122.3 122.7
O2' C2' C1' N9 216.2 261.5
O2' C2' C1' H1' 335.6 23.7
O4' C1' C2' N9 243.6 241.0
O4' C1' C2' H1' 124.2 118.9
C1' C2' C3' H3' 263.9 241.5
C3' C2' C1' O2' 243.3 241.3
C3' C2' C1' H2' 123.0 118.5
O2' C2' C1' H2' 239.7 237.3
C1' C2' O2' HO2' 65.4 183.9
N9 C1' C2' H1' 240.6 237.9
C2' C1' N9 C8 269.0 271.5
C2' C1' N9 C4 89.9 91.4
H2' C2' C3' H3' 25.9 360.0
C3' C2' H2' O2' 120.4 122.6
C3' C2' H2' C1' 241.7 245.6
O2' C2' H2' C1' 121.4 123.0
H2' C2' O2' HO2' 303.1 61.1
H2' C2' C1' N9 336.5 24.3
H2' C2' C1' H1' 95.9 146.4
HO2' O2' C2' C1' 65.4 183.9
HO2' O2' C2' H2' 303.1 61.1
O4' C1' N9 C2' 116.0 115.6
O4' C1' N9 H1' 235.8 237.7
N9 C1' C2' H2' 336.5 24.3
C2' C1' N9 H1' 119.8 122.1
C8 N9 C1' C4 179.1 180.2
C1' N9 C8 N7 181.3 180.0
C1' N9 C8 H8 1.3 359.9
C1' N9 C4 C5 178.3 180.3
C1' N9 C4 N3 358.9 0.2
O4' C1' H1' C2' 241.9 244.5
O4' C1' H1' N9 118.5 122.3
H1' C1' C2' H2' 95.9 146.4
C2' C1' H1' N9 236.5 237.8
H1' C1' N9 C8 149.2 149.4
H1' C1' N9 C4 330.1 329.2
C8 N9 C1' H1' 149.2 149.4
C1' N9 C8 C4 180.7 179.9
C8 N9 C4 C5 359.0 0.2
C8 N9 C4 N3 179.6 180.0
N7 C8 N9 H8 180.0 180.1
N9 C8 N7 C5 0.1 359.7
C4 N9 C1' H1' 330.1 329.2
C1' N9 C4 C8 179.3 180.1
C4 N9 C8 N7 0.6 0.1
C4 N9 C8 H8 180.5 180.0
N7 C5 C4 N9 1.1 359.7
C6 C5 C4 N9 181.9 180.4
C5 C4 N9 N3 179.4 180.1
C2 N3 C4 N9 178.9 179.9
N7 C8 N9 C4 0.6 0.1
N9 C8 N7 H8 180.0 179.9
C8 N7 C5 C6 178.4 179.5
C8 N7 C5 C4 359.2 0.4
H8 C8 N9 C4 180.5 180.0
N9 C8 H8 N7 180.0 180.1
H8 C8 N7 C5 180.1 179.7
N9 C4 C5 N7 1.1 359.7
C5 N7 C8 H8 180.1 179.7
C6 C5 N7 C4 179.1 179.1
N7 C5 C6 N6 358.9 0.8
N7 C5 C6 N1 179.8 180.5
N7 C5 C4 N3 180.6 179.8
N9 C4 C5 C6 181.9 180.4
N7 C5 C6 C4 180.9 181.0
C6 C5 C4 N3 1.3 0.5
N6 C6 C5 N1 179.2 180.3
C5 C6 N6 HN61 180.1 179.7
C5 C6 N6 HN62 54.7 359.5
C5 C6 N1 C2 0.3 0.3
N9 C4 C5 N3 180.6 179.9
N7 C5 C4 C6 179.3 179.2
C4 C5 C6 N6 178.0 179.7
C4 C5 C6 N1 358.8 359.4
C2 N3 C4 C5 359.6 359.8
N6 C6 C5 C4 178.0 179.7
C5 C6 N6 N1 180.8 179.7
N6 C6 N1 C2 181.1 180.0
HN61 N6 C6 HN62 125.3 180.2
N1 C6 C5 C4 358.8 359.4
C5 C6 N1 N6 179.2 180.3
N1 C6 N6 HN61 359.2 0.0
N1 C6 N6 HN62 233.9 179.8
C6 N1 C2 N3 0.7 360.0
C6 N1 C2 H2 180.6 180.0
HN61 N6 C6 N1 359.2 0.0
C6 N6 HN61 HN62 234.7 179.8
HN62 N6 C6 N1 233.9 179.8
C6 N6 HN62 HN61 133.5 180.2
N3 C2 N1 H2 180.1 180.0
N1 C2 N3 C4 359.4 360.0
N9 C4 N3 C2 178.9 179.9
C5 C4 N3 C2 359.6 359.8
N1 C2 N3 H2 179.9 180.0
N1 C2 H2 N3 180.0 180.0
H2 C2 N3 C4 179.4 179.9
N9 C4 N3 C5 179.3 180.1
C4 N3 C2 H2 179.4 179.9