PDB Chemical Component ARA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for ARA
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.532 |
1.529 |
C1 |
O1 |
1.357 |
1.429 |
C1 |
O5 |
1.415 |
1.426 |
C1 |
H1 |
1.115 |
1.090 |
C2 |
C3 |
1.379 |
1.534 |
C2 |
O2 |
1.446 |
1.430 |
C2 |
H2 |
1.115 |
1.090 |
C3 |
C4 |
1.585 |
1.532 |
C3 |
O3 |
1.473 |
1.429 |
C3 |
H3 |
1.115 |
1.090 |
C4 |
C5 |
1.554 |
1.530 |
C4 |
O4 |
1.452 |
1.429 |
C4 |
H4 |
1.116 |
1.090 |
C5 |
O5 |
1.500 |
1.425 |
C5 |
H51 |
1.115 |
1.089 |
C5 |
H52 |
1.115 |
1.090 |
O1 |
HO1 |
0.950 |
0.967 |
O2 |
HO2 |
0.951 |
0.966 |
O3 |
HO3 |
0.950 |
0.967 |
O4 |
HO4 |
0.950 |
0.967 |
Bond Angles for ARA
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
O1 |
108.4 |
109.4 |
C2 |
C1 |
O5 |
105.0 |
109.8 |
C2 |
C1 |
H1 |
112.3 |
109.4 |
C1 |
C2 |
C3 |
109.9 |
109.1 |
C1 |
C2 |
O2 |
106.3 |
109.5 |
C1 |
C2 |
H2 |
110.3 |
109.6 |
O1 |
C1 |
O5 |
107.5 |
109.5 |
O1 |
C1 |
H1 |
110.1 |
109.3 |
C1 |
O1 |
HO1 |
108.4 |
106.8 |
O5 |
C1 |
H1 |
113.3 |
109.4 |
C1 |
O5 |
C5 |
115.9 |
107.6 |
C3 |
C2 |
O2 |
106.3 |
109.6 |
C3 |
C2 |
H2 |
110.2 |
109.5 |
C2 |
C3 |
C4 |
114.5 |
108.6 |
C2 |
C3 |
O3 |
116.0 |
109.6 |
C2 |
C3 |
H3 |
99.6 |
109.6 |
O2 |
C2 |
H2 |
113.6 |
109.5 |
C2 |
O2 |
HO2 |
106.3 |
106.8 |
C4 |
C3 |
O3 |
104.8 |
109.9 |
C4 |
C3 |
H3 |
111.8 |
109.6 |
C3 |
C4 |
C5 |
108.3 |
109.1 |
C3 |
C4 |
O4 |
111.7 |
109.5 |
C3 |
C4 |
H4 |
107.5 |
109.6 |
O3 |
C3 |
H3 |
110.2 |
109.5 |
C3 |
O3 |
HO3 |
116.0 |
106.8 |
C5 |
C4 |
O4 |
105.1 |
109.6 |
C5 |
C4 |
H4 |
113.8 |
109.5 |
C4 |
C5 |
O5 |
108.4 |
109.8 |
C4 |
C5 |
H51 |
112.6 |
109.4 |
C4 |
C5 |
H52 |
112.6 |
109.4 |
O4 |
C4 |
H4 |
110.5 |
109.5 |
C4 |
O4 |
HO4 |
111.7 |
106.8 |
O5 |
C5 |
H51 |
112.6 |
109.4 |
O5 |
C5 |
H52 |
112.6 |
109.4 |
H51 |
C5 |
H52 |
97.8 |
109.3 |
Torsion Angles for ARA
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
C1 |
C2 |
O5 |
114.6 |
120.2 |
O1 |
C1 |
C2 |
H1 |
238.1 |
240.2 |
C2 |
C1 |
O1 |
HO1 |
180.0 |
179.7 |
O5 |
C1 |
C2 |
H1 |
123.5 |
120.1 |
C2 |
C1 |
O5 |
C5 |
294.9 |
292.5 |
C3 |
C2 |
C1 |
O2 |
245.4 |
240.0 |
C3 |
C2 |
C1 |
H2 |
121.8 |
119.8 |
C1 |
C2 |
C3 |
C4 |
299.6 |
306.3 |
C1 |
C2 |
C3 |
O3 |
177.3 |
186.3 |
C1 |
C2 |
C3 |
H3 |
59.1 |
66.1 |
O2 |
C2 |
C1 |
H2 |
236.4 |
239.8 |
C1 |
C2 |
O2 |
HO2 |
180.0 |
60.0 |
C2 |
C1 |
O1 |
O5 |
247.0 |
239.6 |
C2 |
C1 |
O1 |
H1 |
123.2 |
119.8 |
O1 |
C1 |
C2 |
C3 |
179.0 |
181.4 |
O1 |
C1 |
C2 |
O2 |
293.6 |
301.4 |
O1 |
C1 |
C2 |
H2 |
57.2 |
61.5 |
O5 |
C1 |
O1 |
H1 |
236.2 |
240.2 |
O1 |
C1 |
O5 |
C5 |
179.6 |
172.4 |
C2 |
C1 |
O5 |
O1 |
115.3 |
120.2 |
C2 |
C1 |
O5 |
H1 |
237.1 |
239.9 |
O5 |
C1 |
C2 |
C3 |
64.3 |
61.2 |
O5 |
C1 |
C2 |
O2 |
179.0 |
181.2 |
O5 |
C1 |
C2 |
H2 |
302.6 |
301.3 |
O1 |
C1 |
O5 |
H1 |
121.8 |
119.8 |
O5 |
C1 |
O1 |
HO1 |
293.0 |
300.2 |
C4 |
C5 |
O5 |
C1 |
58.4 |
67.5 |
C1 |
O5 |
C5 |
H51 |
293.1 |
307.4 |
C1 |
O5 |
C5 |
H52 |
183.6 |
187.7 |
C2 |
C1 |
H1 |
O1 |
239.1 |
240.2 |
C2 |
C1 |
H1 |
O5 |
118.7 |
120.4 |
H1 |
C1 |
C2 |
C3 |
300.9 |
301.1 |
H1 |
C1 |
C2 |
O2 |
55.5 |
61.1 |
H1 |
C1 |
C2 |
H2 |
179.1 |
181.3 |
O1 |
C1 |
H1 |
O5 |
239.6 |
240.2 |
H1 |
C1 |
O1 |
HO1 |
56.8 |
59.9 |
H1 |
C1 |
O5 |
C5 |
57.8 |
52.6 |
C3 |
C2 |
C1 |
O1 |
179.0 |
181.4 |
C3 |
C2 |
C1 |
O5 |
64.3 |
61.2 |
C3 |
C2 |
C1 |
H1 |
300.9 |
301.1 |
C1 |
C2 |
C3 |
O2 |
114.6 |
119.9 |
C1 |
C2 |
C3 |
H2 |
238.2 |
240.1 |
O2 |
C2 |
C3 |
H2 |
123.6 |
120.2 |
C3 |
C2 |
O2 |
HO2 |
297.1 |
179.6 |
C4 |
C3 |
C2 |
O3 |
122.4 |
120.0 |
C4 |
C3 |
C2 |
H3 |
240.5 |
240.3 |
C2 |
C3 |
C4 |
C5 |
51.1 |
53.7 |
C2 |
C3 |
C4 |
O4 |
295.8 |
293.8 |
C2 |
C3 |
C4 |
H4 |
174.4 |
173.6 |
O3 |
C3 |
C2 |
H3 |
118.2 |
120.3 |
C2 |
C3 |
O3 |
HO3 |
180.0 |
180.0 |
O2 |
C2 |
C1 |
O1 |
293.6 |
301.4 |
O2 |
C2 |
C1 |
O5 |
179.0 |
181.2 |
O2 |
C2 |
C1 |
H1 |
55.5 |
61.1 |
C1 |
C2 |
O2 |
C3 |
242.9 |
240.3 |
C1 |
C2 |
O2 |
H2 |
121.5 |
120.2 |
C3 |
C2 |
O2 |
H2 |
238.6 |
239.8 |
O2 |
C2 |
C3 |
C4 |
185.0 |
186.4 |
O2 |
C2 |
C3 |
O3 |
62.6 |
66.4 |
O2 |
C2 |
C3 |
H3 |
304.5 |
306.1 |
H2 |
C2 |
C1 |
O1 |
57.2 |
61.5 |
H2 |
C2 |
C1 |
O5 |
302.6 |
301.3 |
H2 |
C2 |
C1 |
H1 |
179.1 |
181.3 |
C1 |
C2 |
H2 |
C3 |
121.6 |
119.6 |
C1 |
C2 |
H2 |
O2 |
240.8 |
239.8 |
C3 |
C2 |
H2 |
O2 |
119.2 |
120.2 |
H2 |
C2 |
C3 |
C4 |
61.4 |
66.2 |
H2 |
C2 |
C3 |
O3 |
299.1 |
306.2 |
H2 |
C2 |
C3 |
H3 |
180.9 |
186.0 |
H2 |
C2 |
O2 |
HO2 |
58.5 |
299.8 |
C4 |
C3 |
C2 |
O2 |
185.0 |
186.4 |
C4 |
C3 |
C2 |
H2 |
61.4 |
66.2 |
C2 |
C3 |
C4 |
O3 |
231.8 |
240.1 |
C2 |
C3 |
C4 |
H3 |
112.4 |
119.7 |
O3 |
C3 |
C4 |
H3 |
240.6 |
239.6 |
C4 |
C3 |
O3 |
HO3 |
52.7 |
60.8 |
C5 |
C4 |
C3 |
O4 |
115.3 |
119.9 |
C5 |
C4 |
C3 |
H4 |
236.7 |
240.1 |
C3 |
C4 |
C5 |
O5 |
315.4 |
298.7 |
C3 |
C4 |
C5 |
H51 |
80.7 |
58.8 |
C3 |
C4 |
C5 |
H52 |
190.1 |
178.6 |
O4 |
C4 |
C3 |
H4 |
121.4 |
120.2 |
C3 |
C4 |
O4 |
HO4 |
180.1 |
179.8 |
O3 |
C3 |
C2 |
O2 |
62.6 |
66.4 |
O3 |
C3 |
C2 |
H2 |
299.1 |
306.2 |
C2 |
C3 |
O3 |
C4 |
127.3 |
119.2 |
C2 |
C3 |
O3 |
H3 |
247.8 |
239.7 |
C4 |
C3 |
O3 |
H3 |
120.5 |
120.5 |
O3 |
C3 |
C4 |
C5 |
179.3 |
173.5 |
O3 |
C3 |
C4 |
O4 |
64.0 |
53.6 |
O3 |
C3 |
C4 |
H4 |
302.6 |
293.5 |
H3 |
C3 |
C2 |
O2 |
304.5 |
306.1 |
H3 |
C3 |
C2 |
H2 |
180.9 |
186.0 |
C2 |
C3 |
H3 |
C4 |
238.6 |
240.9 |
C2 |
C3 |
H3 |
O3 |
122.4 |
120.3 |
C4 |
C3 |
H3 |
O3 |
243.8 |
239.4 |
H3 |
C3 |
C4 |
C5 |
298.7 |
294.0 |
H3 |
C3 |
C4 |
O4 |
183.4 |
174.1 |
H3 |
C3 |
C4 |
H4 |
62.0 |
53.9 |
H3 |
C3 |
O3 |
HO3 |
292.2 |
300.3 |
C1 |
O5 |
C5 |
C4 |
58.4 |
67.5 |
C5 |
C4 |
C3 |
O3 |
179.3 |
173.5 |
C5 |
C4 |
C3 |
H3 |
298.7 |
294.0 |
C3 |
C4 |
C5 |
O4 |
240.5 |
240.1 |
C3 |
C4 |
C5 |
H4 |
119.4 |
119.9 |
O4 |
C4 |
C5 |
H4 |
238.9 |
239.8 |
C5 |
C4 |
O4 |
HO4 |
62.9 |
60.2 |
O5 |
C5 |
C4 |
H51 |
234.7 |
239.9 |
O5 |
C5 |
C4 |
H52 |
125.3 |
120.1 |
H51 |
C5 |
C4 |
H52 |
250.6 |
240.2 |
O4 |
C4 |
C3 |
O3 |
64.0 |
53.6 |
O4 |
C4 |
C3 |
H3 |
183.4 |
174.1 |
C3 |
C4 |
O4 |
C5 |
117.2 |
119.6 |
C3 |
C4 |
O4 |
H4 |
240.4 |
239.8 |
C5 |
C4 |
O4 |
H4 |
123.2 |
120.2 |
O4 |
C4 |
C5 |
O5 |
74.9 |
58.6 |
O4 |
C4 |
C5 |
H51 |
200.2 |
178.7 |
O4 |
C4 |
C5 |
H52 |
309.6 |
298.5 |
H4 |
C4 |
C3 |
O3 |
302.6 |
293.5 |
H4 |
C4 |
C3 |
H3 |
62.0 |
53.9 |
C3 |
C4 |
H4 |
C5 |
240.1 |
240.4 |
C3 |
C4 |
H4 |
O4 |
122.1 |
120.2 |
C5 |
C4 |
H4 |
O4 |
242.0 |
239.8 |
H4 |
C4 |
C5 |
O5 |
196.0 |
178.8 |
H4 |
C4 |
C5 |
H51 |
321.3 |
298.9 |
H4 |
C4 |
C5 |
H52 |
70.7 |
58.7 |
H4 |
C4 |
O4 |
HO4 |
299.6 |
300.0 |
C5 |
O5 |
C1 |
H1 |
57.8 |
52.6 |
O5 |
C5 |
C4 |
O4 |
74.9 |
58.6 |
O5 |
C5 |
C4 |
H4 |
196.0 |
178.8 |
C4 |
C5 |
O5 |
H51 |
125.2 |
120.1 |
C4 |
C5 |
O5 |
H52 |
234.8 |
239.9 |
H51 |
C5 |
O5 |
H52 |
109.5 |
119.7 |
H51 |
C5 |
C4 |
O4 |
200.2 |
178.7 |
H51 |
C5 |
C4 |
H4 |
321.3 |
298.9 |
C4 |
C5 |
H51 |
O5 |
237.0 |
239.6 |
C4 |
C5 |
H51 |
H52 |
118.5 |
119.9 |
O5 |
C5 |
H51 |
H52 |
241.4 |
240.2 |
H52 |
C5 |
C4 |
O4 |
309.6 |
298.5 |
H52 |
C5 |
C4 |
H4 |
70.7 |
58.7 |
C4 |
C5 |
H52 |
O5 |
123.0 |
120.4 |
C4 |
C5 |
H52 |
H51 |
241.5 |
240.1 |
O5 |
C5 |
H52 |
H51 |
118.6 |
119.8 |
HO1 |
O1 |
C1 |
O5 |
293.0 |
300.2 |
HO1 |
O1 |
C1 |
H1 |
56.8 |
59.9 |
HO2 |
O2 |
C2 |
H2 |
58.5 |
299.8 |
HO3 |
O3 |
C3 |
H3 |
292.2 |
300.3 |
HO4 |
O4 |
C4 |
H4 |
299.6 |
300.0 |