PDB Chemical Component ABU
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for ABU
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CD |
1.489 |
1.469 |
| N |
H |
0.999 |
1.009 |
| N |
H2 |
1.000 |
1.008 |
| CD |
CB |
1.519 |
1.530 |
| CD |
HA1 |
1.099 |
1.090 |
| CD |
HA2 |
1.100 |
1.090 |
| CB |
CG |
1.529 |
1.530 |
| CB |
HB1 |
1.100 |
1.090 |
| CB |
HB2 |
1.100 |
1.090 |
| CG |
C |
1.530 |
1.507 |
| CG |
HG1 |
1.100 |
1.090 |
| CG |
HG2 |
1.100 |
1.090 |
| C |
O |
1.235 |
1.209 |
| C |
OXT |
1.345 |
1.342 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for ABU
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CD |
N |
H |
109.5 |
111.0 |
| CD |
N |
H2 |
109.5 |
111.0 |
| N |
CD |
CB |
112.6 |
109.5 |
| N |
CD |
HA1 |
108.4 |
109.4 |
| N |
CD |
HA2 |
108.4 |
109.5 |
| H |
N |
H2 |
109.5 |
111.0 |
| CB |
CD |
HA1 |
108.4 |
109.5 |
| CB |
CD |
HA2 |
108.4 |
109.5 |
| CD |
CB |
CG |
114.1 |
109.5 |
| CD |
CB |
HB1 |
108.0 |
109.4 |
| CD |
CB |
HB2 |
108.0 |
109.4 |
| HA1 |
CD |
HA2 |
110.5 |
109.5 |
| CG |
CB |
HB1 |
108.0 |
109.5 |
| CG |
CB |
HB2 |
108.0 |
109.5 |
| CB |
CG |
C |
110.4 |
109.5 |
| CB |
CG |
HG1 |
109.2 |
109.5 |
| CB |
CG |
HG2 |
109.2 |
109.4 |
| HB1 |
CB |
HB2 |
110.9 |
109.5 |
| C |
CG |
HG1 |
109.1 |
109.5 |
| C |
CG |
HG2 |
109.2 |
109.5 |
| CG |
C |
O |
120.8 |
120.0 |
| CG |
C |
OXT |
119.2 |
120.0 |
| HG1 |
CG |
HG2 |
109.8 |
109.5 |
| O |
C |
OXT |
120.0 |
120.0 |
| C |
OXT |
HXT |
109.5 |
117.1 |
Torsion Angles for ABU
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CD |
H2 |
240.0 |
236.1 |
| CB |
CD |
N |
HA1 |
240.0 |
240.0 |
| CB |
CD |
N |
HA2 |
120.0 |
120.0 |
| N |
CD |
CB |
CG |
189.0 |
180.0 |
| N |
CD |
CB |
HB1 |
309.0 |
300.0 |
| N |
CD |
CB |
HB2 |
69.0 |
60.0 |
| HA1 |
CD |
N |
HA2 |
240.0 |
240.0 |
| CD |
N |
H |
H2 |
120.0 |
124.0 |
| H |
N |
CD |
CB |
180.0 |
56.0 |
| H |
N |
CD |
HA1 |
300.0 |
176.0 |
| H |
N |
CD |
HA2 |
60.0 |
296.0 |
| CD |
N |
H2 |
H |
240.0 |
236.0 |
| H2 |
N |
CD |
CB |
300.0 |
180.0 |
| H2 |
N |
CD |
HA1 |
60.0 |
299.9 |
| H2 |
N |
CD |
HA2 |
180.0 |
59.9 |
| CB |
CD |
N |
H |
180.0 |
56.0 |
| CB |
CD |
N |
H2 |
300.0 |
180.0 |
| N |
CD |
CB |
HA1 |
120.0 |
119.9 |
| N |
CD |
CB |
HA2 |
240.0 |
240.0 |
| HA1 |
CD |
CB |
HA2 |
120.0 |
120.1 |
| CG |
CB |
CD |
HB1 |
240.0 |
240.0 |
| CG |
CB |
CD |
HB2 |
120.0 |
120.0 |
| CD |
CB |
CG |
C |
75.1 |
180.0 |
| CD |
CB |
CG |
HG1 |
195.1 |
300.0 |
| CD |
CB |
CG |
HG2 |
315.1 |
60.0 |
| HB1 |
CB |
CD |
HB2 |
240.0 |
240.0 |
| HA1 |
CD |
N |
H |
300.0 |
176.0 |
| HA1 |
CD |
N |
H2 |
60.0 |
299.9 |
| N |
CD |
HA1 |
CB |
237.4 |
240.0 |
| N |
CD |
HA1 |
HA2 |
118.7 |
120.0 |
| CB |
CD |
HA1 |
HA2 |
241.3 |
240.0 |
| HA1 |
CD |
CB |
CG |
69.0 |
60.0 |
| HA1 |
CD |
CB |
HB1 |
189.0 |
180.0 |
| HA1 |
CD |
CB |
HB2 |
309.0 |
300.0 |
| HA2 |
CD |
N |
H |
60.0 |
296.0 |
| HA2 |
CD |
N |
H2 |
180.0 |
59.9 |
| N |
CD |
HA2 |
CB |
122.6 |
120.0 |
| N |
CD |
HA2 |
HA1 |
241.3 |
240.1 |
| CB |
CD |
HA2 |
HA1 |
118.7 |
120.0 |
| HA2 |
CD |
CB |
CG |
309.0 |
300.0 |
| HA2 |
CD |
CB |
HB1 |
69.0 |
60.0 |
| HA2 |
CD |
CB |
HB2 |
189.0 |
180.0 |
| CG |
CB |
CD |
HA1 |
69.0 |
60.0 |
| CG |
CB |
CD |
HA2 |
309.0 |
300.0 |
| CD |
CB |
CG |
HB1 |
120.0 |
120.0 |
| CD |
CB |
CG |
HB2 |
240.0 |
240.0 |
| HB1 |
CB |
CG |
HB2 |
120.0 |
120.1 |
| C |
CG |
CB |
HG1 |
240.0 |
240.0 |
| C |
CG |
CB |
HG2 |
120.0 |
120.0 |
| CB |
CG |
C |
O |
51.1 |
0.0 |
| CB |
CG |
C |
OXT |
231.4 |
180.0 |
| HG1 |
CG |
CB |
HG2 |
240.0 |
240.0 |
| HB1 |
CB |
CD |
HA1 |
189.0 |
180.0 |
| HB1 |
CB |
CD |
HA2 |
69.0 |
60.0 |
| CD |
CB |
HB1 |
CG |
236.2 |
240.0 |
| CD |
CB |
HB1 |
HB2 |
118.1 |
120.0 |
| CG |
CB |
HB1 |
HB2 |
241.9 |
239.9 |
| HB1 |
CB |
CG |
C |
315.1 |
60.0 |
| HB1 |
CB |
CG |
HG1 |
75.1 |
180.0 |
| HB1 |
CB |
CG |
HG2 |
195.1 |
300.0 |
| HB2 |
CB |
CD |
HA1 |
309.0 |
300.0 |
| HB2 |
CB |
CD |
HA2 |
189.0 |
180.0 |
| CD |
CB |
HB2 |
CG |
123.8 |
120.0 |
| CD |
CB |
HB2 |
HB1 |
241.9 |
240.0 |
| CG |
CB |
HB2 |
HB1 |
118.1 |
120.1 |
| HB2 |
CB |
CG |
C |
195.1 |
299.9 |
| HB2 |
CB |
CG |
HG1 |
315.1 |
60.0 |
| HB2 |
CB |
CG |
HG2 |
75.1 |
180.0 |
| C |
CG |
CB |
HB1 |
315.1 |
60.0 |
| C |
CG |
CB |
HB2 |
195.1 |
299.9 |
| CB |
CG |
C |
HG1 |
120.0 |
120.0 |
| CB |
CG |
C |
HG2 |
240.0 |
240.1 |
| HG1 |
CG |
C |
HG2 |
120.0 |
120.1 |
| O |
C |
CG |
OXT |
179.7 |
180.0 |
| CG |
C |
OXT |
HXT |
179.8 |
180.1 |
| HG1 |
CG |
CB |
HB1 |
75.1 |
180.0 |
| HG1 |
CG |
CB |
HB2 |
315.1 |
60.0 |
| CB |
CG |
HG1 |
C |
239.3 |
240.0 |
| CB |
CG |
HG1 |
HG2 |
119.7 |
120.0 |
| C |
CG |
HG1 |
HG2 |
240.4 |
240.0 |
| HG1 |
CG |
C |
O |
291.1 |
240.0 |
| HG1 |
CG |
C |
OXT |
111.4 |
60.0 |
| HG2 |
CG |
CB |
HB1 |
195.1 |
300.0 |
| HG2 |
CG |
CB |
HB2 |
75.1 |
180.0 |
| CB |
CG |
HG2 |
C |
120.7 |
120.0 |
| CB |
CG |
HG2 |
HG1 |
240.3 |
240.0 |
| C |
CG |
HG2 |
HG1 |
119.6 |
120.1 |
| HG2 |
CG |
C |
O |
171.1 |
120.0 |
| HG2 |
CG |
C |
OXT |
351.4 |
299.9 |
| O |
C |
CG |
HG1 |
291.1 |
240.0 |
| O |
C |
CG |
HG2 |
171.1 |
120.0 |
| CG |
C |
O |
OXT |
180.3 |
180.0 |
| O |
C |
OXT |
HXT |
0.0 |
0.0 |
| OXT |
C |
CG |
HG1 |
111.4 |
60.0 |
| OXT |
C |
CG |
HG2 |
351.4 |
299.9 |
| CG |
C |
OXT |
O |
179.8 |
180.0 |