PDB Chemical Component 6PG

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 6PG

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.541	1.507
C1	O1A	1.202	1.207
C1	O1	1.195	1.342
C2	C3	1.584	1.530
C2	O2	1.426	1.429
C2	H2	1.115	1.089
C3	C4	1.559	1.529
C3	O3	1.433	1.429
C3	H3	1.116	1.090
C4	C5	1.532	1.529
C4	O4	1.424	1.429
C4	H4	1.115	1.090
C5	C6	1.531	1.529
C5	O5	1.414	1.429
C5	H5	1.115	1.090
C6	O6	1.438	1.427
C6	H61	1.115	1.090
C6	H62	1.115	1.090
O1	HO1	0.950	0.967
O2	HO2	0.950	0.966
O3	HO3	0.951	0.966
O4	HO4	0.950	0.967
O5	HO5	0.951	0.967
O6	P	1.535	1.609
P	O1P	1.555	1.481
P	O2P	1.562	1.609
P	O3P	1.570	1.610
O2P	HOP2	0.950	0.967
O3P	HOP3	0.950	0.967

Bond Angles for 6PG

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1A	120.5	120.1
C2	C1	O1	119.8	120.0
C1	C2	C3	110.8	109.5
C1	C2	O2	110.5	109.5
C1	C2	H2	108.2	109.5
O1A	C1	O1	119.7	120.0
C1	O1	HO1	119.8	120.0
C3	C2	O2	110.6	109.4
C3	C2	H2	108.2	109.4
C2	C3	C4	111.9	109.5
C2	C3	O3	109.5	109.4
C2	C3	H3	108.0	109.5
O2	C2	H2	108.5	109.5
C2	O2	HO2	110.5	106.8
C4	C3	O3	110.1	109.4
C4	C3	H3	107.4	109.5
C3	C4	C5	113.8	109.5
C3	C4	O4	109.4	109.5
C3	C4	H4	105.8	109.4
O3	C3	H3	109.8	109.4
C3	O3	HO3	109.5	106.9
C5	C4	O4	106.9	109.5
C5	C4	H4	108.3	109.5
C4	C5	C6	114.5	109.5
C4	C5	O5	107.4	109.5
C4	C5	H5	106.8	109.4
O4	C4	H4	112.8	109.4
C4	O4	HO4	109.4	106.8
C6	C5	O5	107.1	109.5
C6	C5	H5	107.0	109.4
C5	C6	O6	109.0	109.5
C5	C6	H61	112.4	109.5
C5	C6	H62	112.4	109.4
O5	C5	H5	114.2	109.5
C5	O5	HO5	107.4	106.7
O6	C6	H61	112.4	109.5
O6	C6	H62	112.4	109.5
C6	O6	P	115.7	106.9
H61	C6	H62	98.0	109.3
O6	P	O1P	108.7	109.5
O6	P	O2P	108.8	109.6
O6	P	O3P	108.9	109.5
O1P	P	O2P	110.0	109.4
O1P	P	O3P	110.2	109.4
O2P	P	O3P	110.2	109.5
P	O2P	HOP2	108.8	106.8
P	O3P	HOP3	108.9	106.7

Torsion Angles for 6PG

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1A	C1	C2	O1	179.7	179.9
C2	C1	O1	HO1	180.0	180.0
C3	C2	C1	O2	237.1	240.0
C3	C2	C1	H2	118.5	120.0
C1	C2	C3	C4	120.8	179.9
C1	C2	C3	O3	358.4	60.0
C1	C2	C3	H3	238.8	300.0
O2	C2	C1	H2	241.4	240.0
C1	C2	O2	HO2	180.0	300.1
C2	C1	O1A	O1	180.3	180.1
O1A	C1	C2	C3	229.0	240.0
O1A	C1	C2	O2	351.9	359.9
O1A	C1	C2	H2	110.5	119.9
O1A	C1	O1	HO1	0.3	0.1
C2	C1	O1	O1A	179.7	179.9
O1	C1	C2	C3	49.4	60.0
O1	C1	C2	O2	172.2	180.0
O1	C1	C2	H2	290.9	300.0
C3	C2	C1	O1A	229.0	240.0
C3	C2	C1	O1	49.4	60.0
C1	C2	C3	O2	122.9	120.0
C1	C2	C3	H2	241.5	239.9
O2	C2	C3	H2	118.6	119.9
C3	C2	O2	HO2	303.0	60.1
C4	C3	C2	O3	122.4	120.0
C4	C3	C2	H3	242.0	239.9
C2	C3	C4	C5	148.8	180.0
C2	C3	C4	O4	268.3	300.1
C2	C3	C4	H4	30.1	60.0
O3	C3	C2	H3	119.6	119.9
C2	C3	O3	HO3	180.0	60.0
O2	C2	C1	O1A	351.9	359.9
O2	C2	C1	O1	172.2	180.0
C1	C2	O2	C3	237.0	240.0
C1	C2	O2	H2	118.5	120.1
C3	C2	O2	H2	241.5	240.1
O2	C2	C3	C4	357.9	60.0
O2	C2	C3	O3	235.5	300.0
O2	C2	C3	H3	115.9	180.1
H2	C2	C1	O1A	110.5	119.9
H2	C2	C1	O1	290.9	300.0
C1	C2	H2	C3	120.1	120.1
C1	C2	H2	O2	240.0	240.0
C3	C2	H2	O2	120.0	119.9
H2	C2	C3	C4	239.3	300.0
H2	C2	C3	O3	116.9	180.0
H2	C2	C3	H3	357.3	60.1
H2	C2	O2	HO2	61.5	180.0
C4	C3	C2	O2	357.9	60.0
C4	C3	C2	H2	239.3	300.0
C2	C3	C4	O3	238.0	240.0
C2	C3	C4	H3	118.4	120.1
O3	C3	C4	H3	240.4	240.0
C4	C3	O3	HO3	56.6	300.0
C5	C4	C3	O4	240.5	239.9
C5	C4	C3	H4	118.7	120.0
C3	C4	C5	C6	183.0	180.0
C3	C4	C5	O5	301.8	300.1
C3	C4	C5	H5	64.7	60.0
O4	C4	C3	H4	238.2	240.1
C3	C4	O4	HO4	180.1	299.9
O3	C3	C2	O2	235.5	300.0
O3	C3	C2	H2	116.9	180.0
C2	C3	O3	C4	123.5	120.0
C2	C3	O3	H3	241.5	240.0
C4	C3	O3	H3	118.1	120.0
O3	C3	C4	C5	270.9	299.9
O3	C3	C4	O4	30.3	60.0
O3	C3	C4	H4	152.1	179.9
H3	C3	C2	O2	115.9	180.1
H3	C3	C2	H2	357.3	60.1
C2	C3	H3	C4	239.1	239.9
C2	C3	H3	O3	119.4	119.9
C4	C3	H3	O3	240.2	240.0
H3	C3	C4	C5	30.5	59.9
H3	C3	C4	O4	149.9	180.0
H3	C3	C4	H4	271.7	299.9
H3	C3	O3	HO3	298.5	180.0
C5	C4	C3	O3	270.9	299.9
C5	C4	C3	H3	30.5	59.9
C3	C4	C5	O4	120.9	120.1
C3	C4	C5	H4	242.7	240.0
O4	C4	C5	H4	121.8	120.0
C5	C4	O4	HO4	303.7	60.0
C6	C5	C4	O5	241.2	239.9
C6	C5	C4	H5	118.3	120.0
C4	C5	C6	O6	35.8	180.0
C4	C5	C6	H61	161.0	300.1
C4	C5	C6	H62	270.5	60.0
O5	C5	C4	H5	237.1	240.0
C4	C5	O5	HO5	179.9	300.0
O4	C4	C3	O3	30.3	60.0
O4	C4	C3	H3	149.9	180.0
C3	C4	O4	C5	236.4	239.9
C3	C4	O4	H4	117.5	119.9
C5	C4	O4	H4	241.1	240.0
O4	C4	C5	C6	62.1	59.9
O4	C4	C5	O5	180.9	180.0
O4	C4	C5	H5	303.8	300.0
H4	C4	C3	O3	152.1	179.9
H4	C4	C3	H3	271.7	299.9
C3	C4	H4	C5	122.3	120.0
C3	C4	H4	O4	240.4	240.1
C5	C4	H4	O4	118.1	120.0
H4	C4	C5	C6	300.3	300.0
H4	C4	C5	O5	59.1	60.1
H4	C4	C5	H5	182.0	180.0
H4	C4	O4	HO4	62.6	180.0
C6	C5	C4	O4	62.1	59.9
C6	C5	C4	H4	300.3	300.0
C4	C5	C6	O5	119.0	120.1
C4	C5	C6	H5	241.9	240.1
O5	C5	C6	H5	122.9	120.0
C6	C5	O5	HO5	303.4	60.1
O6	C6	C5	H61	234.7	239.9
O6	C6	C5	H62	125.3	120.1
C5	C6	O6	P	200.2	180.0
H61	C6	C5	H62	250.6	240.2
O5	C5	C4	O4	180.9	180.0
O5	C5	C4	H4	59.1	60.1
C4	C5	O5	C6	236.5	239.9
C4	C5	O5	H5	118.2	119.9
C6	C5	O5	H5	241.7	240.0
O5	C5	C6	O6	276.8	59.9
O5	C5	C6	H61	42.1	180.1
O5	C5	C6	H62	151.5	299.9
H5	C5	C4	O4	303.8	300.0
H5	C5	C4	H4	182.0	180.0
C4	C5	H5	C6	123.1	120.0
C4	C5	H5	O5	241.5	240.0
C6	C5	H5	O5	118.4	120.0
H5	C5	C6	O6	153.9	299.9
H5	C5	C6	H61	279.2	60.0
H5	C5	C6	H62	28.6	179.9
H5	C5	O5	HO5	61.8	180.1
O6	C6	C5	O5	276.8	59.9
O6	C6	C5	H5	153.9	299.9
C5	C6	O6	H61	125.2	120.1
C5	C6	O6	H62	234.7	240.0
H61	C6	O6	H62	109.5	119.9
C6	O6	P	O1P	311.5	60.0
C6	O6	P	O2P	71.2	180.0
C6	O6	P	O3P	191.4	300.1
H61	C6	C5	O5	42.1	180.1
H61	C6	C5	H5	279.2	60.0
C5	C6	H61	O6	236.6	239.9
C5	C6	H61	H62	118.3	119.9
O6	C6	H61	H62	241.6	240.0
H61	C6	O6	P	74.9	59.9
H62	C6	C5	O5	151.5	299.9
H62	C6	C5	H5	28.6	179.9
C5	C6	H62	O6	123.4	120.1
C5	C6	H62	H61	241.7	240.1
O6	C6	H62	H61	118.4	120.0
H62	C6	O6	P	325.4	300.0
HO2	O2	C2	H2	61.5	180.0
HO3	O3	C3	H3	298.5	180.0
HO4	O4	C4	H4	62.6	180.0
HO5	O5	C5	H5	61.8	180.1
P	O6	C6	H61	74.9	59.9
P	O6	C6	H62	325.4	300.0
O1P	P	O6	O2P	240.2	240.0
O1P	P	O6	O3P	120.1	119.9
O2P	P	O6	O3P	239.8	239.9
O6	P	O2P	HOP2	180.1	180.0
O6	P	O3P	HOP3	180.0	299.9
O6	P	O1P	O2P	119.0	120.1
O6	P	O1P	O3P	240.7	240.0
O2P	P	O1P	O3P	121.7	119.9
O1P	P	O2P	HOP2	299.0	300.0
O1P	P	O3P	HOP3	60.8	180.0
O6	P	O2P	O1P	241.0	240.0
O6	P	O2P	O3P	119.4	120.1
O1P	P	O2P	O3P	238.3	240.1
O2P	P	O3P	HOP3	299.2	60.1
O6	P	O3P	O1P	119.2	119.9
O6	P	O3P	O2P	240.7	239.9
O1P	P	O3P	O2P	121.5	119.9
O3P	P	O2P	HOP2	60.7	59.9
HOP2	O2P	P	O3P	60.7	59.9