PDB Chemical Component 3MB

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 3MB

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C3 O3 1.406 1.359
C3 C2 1.419 1.385
C3 C4 1.409 1.388
O3 C7 1.447 1.429
C7 H71 1.116 1.091
C7 H72 1.115 1.089
C7 H73 1.116 1.089
C2 C1 1.421 1.393
C2 H2 1.103 1.080
C1 C 1.512 1.478
C1 C6 1.421 1.396
C O 1.233 1.216
C N 1.341 1.347
N HN1 1.021 0.970
N HN2 1.020 0.970
C6 C5 1.406 1.379
C6 H6 1.102 1.080
C5 C4 1.411 1.383
C5 H5 1.102 1.080
C4 H4 1.103 1.080

Bond Angles for 3MB

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O3 C3 C2 122.4 120.0
O3 C3 C4 118.6 120.0
C3 O3 C7 121.7 106.8
C2 C3 C4 119.0 120.0
C3 C2 C1 120.4 119.8
C3 C2 H2 119.7 120.0
C3 C4 C5 121.0 120.2
C3 C4 H4 119.4 119.9
O3 C7 H71 121.7 109.4
O3 C7 H72 107.9 109.4
O3 C7 H73 107.9 109.5
H71 C7 H72 107.8 109.4
H71 C7 H73 107.8 109.4
H72 C7 H73 102.0 109.6
C1 C2 H2 119.9 120.2
C2 C1 C 120.1 120.1
C2 C1 C6 119.6 119.8
C C1 C6 120.3 120.0
C1 C O 119.7 120.0
C1 C N 119.9 120.1
C1 C6 C5 119.8 119.9
C1 C6 H6 120.6 120.0
O C N 120.4 119.9
C N HN1 120.5 120.1
C N HN2 119.9 119.9
HN1 N HN2 119.6 120.0
C5 C6 H6 119.5 120.0
C6 C5 C4 120.2 120.2
C6 C5 H5 119.7 119.9
C4 C5 H5 120.1 119.9
C5 C4 H4 119.6 119.9

Torsion Angles for 3MB

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 C3 O3 C4 180.2 179.8
O3 C3 C2 C1 180.2 179.8
O3 C3 C2 H2 0.2 0.2
O3 C3 C4 C5 179.8 180.0
O3 C3 C4 H4 359.8 -0.0
C3 O3 C7 H71 179.9 180.0
C3 O3 C7 H72 305.3 299.9
C3 O3 C7 H73 54.8 60.1
O3 C3 C2 C4 179.8 180.2
C2 C3 O3 C7 344.8 179.8
C2 C3 C4 C5 359.6 0.2
C2 C3 C4 H4 179.6 180.2
C1 C2 C3 H2 180.0 179.6
C3 C2 C1 C 179.8 180.2
C3 C2 C1 C6 0.0 0.4
O3 C3 C4 C2 180.2 179.8
C4 C3 O3 C7 164.6 360.0
C4 C3 C2 C1 0.4 359.6
C4 C3 C2 H2 180.4 180.0
C6 C5 C4 C3 0.0 -0.0
C3 C4 C5 H5 180.1 180.0
C5 C4 C3 H4 180.0 180.0
C7 O3 C3 C2 344.8 179.8
C7 O3 C3 C4 164.6 -0.0
H71 C7 O3 H72 234.7 240.1
H71 C7 O3 H73 125.2 119.9
H72 C7 O3 H73 250.5 239.8
O3 C7 H71 H72 125.3 119.9
O3 C7 H71 H73 234.8 240.0
H72 C7 H71 H73 109.4 120.1
O3 C7 H72 H71 226.8 240.1
O3 C7 H72 H73 113.5 120.1
H71 C7 H72 H73 246.7 240.0
O3 C7 H73 H71 133.1 119.9
O3 C7 H73 H72 246.5 239.9
H71 C7 H73 H72 113.4 120.0
C1 C2 C3 C4 0.4 359.6
C3 C2 C1 H2 180.0 180.4
C C1 C2 C6 179.8 179.8
C2 C1 C O 183.3 0.2
C2 C1 C N 3.6 180.2
C2 C1 C6 C5 359.6 359.8
C2 C1 C6 H6 179.5 179.8
H2 C2 C3 C4 180.4 180.0
C3 C2 H2 C1 180.0 179.6
H2 C2 C1 C 359.8 359.8
H2 C2 C1 C6 180.0 180.0
C C1 C2 H2 359.8 359.8
C2 C1 C C6 180.2 180.2
C C1 C6 C5 179.8 180.0
C C1 C6 H6 359.7 -0.0
O C C1 N 179.7 180.1
C1 C N HN1 359.7 180.0
C1 C N HN2 180.1 -0.0
C6 C1 C2 H2 180.0 180.0
C2 C1 C6 C 179.8 179.8
C6 C1 C O 3.1 180.1
C6 C1 C N 183.4 -0.0
C5 C6 C1 H6 180.1 180.0
C1 C6 C5 C4 0.4 360.0
C1 C6 C5 H5 180.4 180.0
O C C1 C6 3.1 180.1
C1 C O N 180.3 179.9
O C N HN1 180.0 359.9
O C N HN2 0.3 179.9
N C C1 C6 183.4 -0.0
C1 C N O 179.7 180.1
HN1 N C HN2 179.6 180.0
C N HN1 HN2 180.4 180.0
C N HN2 HN1 179.6 180.0
C3 C4 C5 C6 0.0 -0.0
C1 C6 C5 H6 180.0 180.0
C4 C5 C6 H5 180.0 180.0
C6 C5 C4 H4 180.0 180.0
C1 C6 H6 C5 180.0 180.0
H6 C6 C5 C4 180.4 180.0
H6 C6 C5 H5 0.4 -0.0
C3 C4 C5 H4 180.0 180.0
C4 C5 C6 H6 180.4 180.0
C6 C5 C4 H5 180.0 180.0
H5 C5 C6 H6 0.4 -0.0
C6 C5 H5 C4 180.0 180.0
H5 C5 C4 H4 0.0 -0.0
C3 C4 H4 C5 180.0 180.0
H4 C4 C5 H5 0.0 -0.0