PDB Chemical Component 3MB
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 3MB
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C3 |
O3 |
1.406 |
1.359 |
C3 |
C2 |
1.419 |
1.385 |
C3 |
C4 |
1.409 |
1.388 |
O3 |
C7 |
1.447 |
1.429 |
C7 |
H71 |
1.116 |
1.091 |
C7 |
H72 |
1.115 |
1.089 |
C7 |
H73 |
1.116 |
1.089 |
C2 |
C1 |
1.421 |
1.393 |
C2 |
H2 |
1.103 |
1.080 |
C1 |
C |
1.512 |
1.478 |
C1 |
C6 |
1.421 |
1.396 |
C |
O |
1.233 |
1.216 |
C |
N |
1.341 |
1.347 |
N |
HN1 |
1.021 |
0.970 |
N |
HN2 |
1.020 |
0.970 |
C6 |
C5 |
1.406 |
1.379 |
C6 |
H6 |
1.102 |
1.080 |
C5 |
C4 |
1.411 |
1.383 |
C5 |
H5 |
1.102 |
1.080 |
C4 |
H4 |
1.103 |
1.080 |
Bond Angles for 3MB
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O3 |
C3 |
C2 |
122.4 |
120.0 |
O3 |
C3 |
C4 |
118.6 |
120.0 |
C3 |
O3 |
C7 |
121.7 |
106.8 |
C2 |
C3 |
C4 |
119.0 |
120.0 |
C3 |
C2 |
C1 |
120.4 |
119.8 |
C3 |
C2 |
H2 |
119.7 |
120.0 |
C3 |
C4 |
C5 |
121.0 |
120.2 |
C3 |
C4 |
H4 |
119.4 |
119.9 |
O3 |
C7 |
H71 |
121.7 |
109.4 |
O3 |
C7 |
H72 |
107.9 |
109.4 |
O3 |
C7 |
H73 |
107.9 |
109.5 |
H71 |
C7 |
H72 |
107.8 |
109.4 |
H71 |
C7 |
H73 |
107.8 |
109.4 |
H72 |
C7 |
H73 |
102.0 |
109.6 |
C1 |
C2 |
H2 |
119.9 |
120.2 |
C2 |
C1 |
C |
120.1 |
120.1 |
C2 |
C1 |
C6 |
119.6 |
119.8 |
C |
C1 |
C6 |
120.3 |
120.0 |
C1 |
C |
O |
119.7 |
120.0 |
C1 |
C |
N |
119.9 |
120.1 |
C1 |
C6 |
C5 |
119.8 |
119.9 |
C1 |
C6 |
H6 |
120.6 |
120.0 |
O |
C |
N |
120.4 |
119.9 |
C |
N |
HN1 |
120.5 |
120.1 |
C |
N |
HN2 |
119.9 |
119.9 |
HN1 |
N |
HN2 |
119.6 |
120.0 |
C5 |
C6 |
H6 |
119.5 |
120.0 |
C6 |
C5 |
C4 |
120.2 |
120.2 |
C6 |
C5 |
H5 |
119.7 |
119.9 |
C4 |
C5 |
H5 |
120.1 |
119.9 |
C5 |
C4 |
H4 |
119.6 |
119.9 |
Torsion Angles for 3MB
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C3 |
O3 |
C4 |
180.2 |
179.8 |
O3 |
C3 |
C2 |
C1 |
180.2 |
179.8 |
O3 |
C3 |
C2 |
H2 |
0.2 |
0.2 |
O3 |
C3 |
C4 |
C5 |
179.8 |
180.0 |
O3 |
C3 |
C4 |
H4 |
359.8 |
-0.0 |
C3 |
O3 |
C7 |
H71 |
179.9 |
180.0 |
C3 |
O3 |
C7 |
H72 |
305.3 |
299.9 |
C3 |
O3 |
C7 |
H73 |
54.8 |
60.1 |
O3 |
C3 |
C2 |
C4 |
179.8 |
180.2 |
C2 |
C3 |
O3 |
C7 |
344.8 |
179.8 |
C2 |
C3 |
C4 |
C5 |
359.6 |
0.2 |
C2 |
C3 |
C4 |
H4 |
179.6 |
180.2 |
C1 |
C2 |
C3 |
H2 |
180.0 |
179.6 |
C3 |
C2 |
C1 |
C |
179.8 |
180.2 |
C3 |
C2 |
C1 |
C6 |
0.0 |
0.4 |
O3 |
C3 |
C4 |
C2 |
180.2 |
179.8 |
C4 |
C3 |
O3 |
C7 |
164.6 |
360.0 |
C4 |
C3 |
C2 |
C1 |
0.4 |
359.6 |
C4 |
C3 |
C2 |
H2 |
180.4 |
180.0 |
C6 |
C5 |
C4 |
C3 |
0.0 |
-0.0 |
C3 |
C4 |
C5 |
H5 |
180.1 |
180.0 |
C5 |
C4 |
C3 |
H4 |
180.0 |
180.0 |
C7 |
O3 |
C3 |
C2 |
344.8 |
179.8 |
C7 |
O3 |
C3 |
C4 |
164.6 |
-0.0 |
H71 |
C7 |
O3 |
H72 |
234.7 |
240.1 |
H71 |
C7 |
O3 |
H73 |
125.2 |
119.9 |
H72 |
C7 |
O3 |
H73 |
250.5 |
239.8 |
O3 |
C7 |
H71 |
H72 |
125.3 |
119.9 |
O3 |
C7 |
H71 |
H73 |
234.8 |
240.0 |
H72 |
C7 |
H71 |
H73 |
109.4 |
120.1 |
O3 |
C7 |
H72 |
H71 |
226.8 |
240.1 |
O3 |
C7 |
H72 |
H73 |
113.5 |
120.1 |
H71 |
C7 |
H72 |
H73 |
246.7 |
240.0 |
O3 |
C7 |
H73 |
H71 |
133.1 |
119.9 |
O3 |
C7 |
H73 |
H72 |
246.5 |
239.9 |
H71 |
C7 |
H73 |
H72 |
113.4 |
120.0 |
C1 |
C2 |
C3 |
C4 |
0.4 |
359.6 |
C3 |
C2 |
C1 |
H2 |
180.0 |
180.4 |
C |
C1 |
C2 |
C6 |
179.8 |
179.8 |
C2 |
C1 |
C |
O |
183.3 |
0.2 |
C2 |
C1 |
C |
N |
3.6 |
180.2 |
C2 |
C1 |
C6 |
C5 |
359.6 |
359.8 |
C2 |
C1 |
C6 |
H6 |
179.5 |
179.8 |
H2 |
C2 |
C3 |
C4 |
180.4 |
180.0 |
C3 |
C2 |
H2 |
C1 |
180.0 |
179.6 |
H2 |
C2 |
C1 |
C |
359.8 |
359.8 |
H2 |
C2 |
C1 |
C6 |
180.0 |
180.0 |
C |
C1 |
C2 |
H2 |
359.8 |
359.8 |
C2 |
C1 |
C |
C6 |
180.2 |
180.2 |
C |
C1 |
C6 |
C5 |
179.8 |
180.0 |
C |
C1 |
C6 |
H6 |
359.7 |
-0.0 |
O |
C |
C1 |
N |
179.7 |
180.1 |
C1 |
C |
N |
HN1 |
359.7 |
180.0 |
C1 |
C |
N |
HN2 |
180.1 |
-0.0 |
C6 |
C1 |
C2 |
H2 |
180.0 |
180.0 |
C2 |
C1 |
C6 |
C |
179.8 |
179.8 |
C6 |
C1 |
C |
O |
3.1 |
180.1 |
C6 |
C1 |
C |
N |
183.4 |
-0.0 |
C5 |
C6 |
C1 |
H6 |
180.1 |
180.0 |
C1 |
C6 |
C5 |
C4 |
0.4 |
360.0 |
C1 |
C6 |
C5 |
H5 |
180.4 |
180.0 |
O |
C |
C1 |
C6 |
3.1 |
180.1 |
C1 |
C |
O |
N |
180.3 |
179.9 |
O |
C |
N |
HN1 |
180.0 |
359.9 |
O |
C |
N |
HN2 |
0.3 |
179.9 |
N |
C |
C1 |
C6 |
183.4 |
-0.0 |
C1 |
C |
N |
O |
179.7 |
180.1 |
HN1 |
N |
C |
HN2 |
179.6 |
180.0 |
C |
N |
HN1 |
HN2 |
180.4 |
180.0 |
C |
N |
HN2 |
HN1 |
179.6 |
180.0 |
C3 |
C4 |
C5 |
C6 |
0.0 |
-0.0 |
C1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
C4 |
C5 |
C6 |
H5 |
180.0 |
180.0 |
C6 |
C5 |
C4 |
H4 |
180.0 |
180.0 |
C1 |
C6 |
H6 |
C5 |
180.0 |
180.0 |
H6 |
C6 |
C5 |
C4 |
180.4 |
180.0 |
H6 |
C6 |
C5 |
H5 |
0.4 |
-0.0 |
C3 |
C4 |
C5 |
H4 |
180.0 |
180.0 |
C4 |
C5 |
C6 |
H6 |
180.4 |
180.0 |
C6 |
C5 |
C4 |
H5 |
180.0 |
180.0 |
H5 |
C5 |
C6 |
H6 |
0.4 |
-0.0 |
C6 |
C5 |
H5 |
C4 |
180.0 |
180.0 |
H5 |
C5 |
C4 |
H4 |
0.0 |
-0.0 |
C3 |
C4 |
H4 |
C5 |
180.0 |
180.0 |
H4 |
C4 |
C5 |
H5 |
0.0 |
-0.0 |