PDB Chemical Component 2EP
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 2EP
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N1 |
C2 |
1.559 |
1.466 |
N1 |
C6 |
1.550 |
1.465 |
N1 |
HN1 |
1.020 |
1.009 |
C2 |
C3 |
1.536 |
1.529 |
C2 |
C1' |
1.358 |
1.530 |
C2 |
H2 |
1.115 |
1.090 |
C3 |
C4 |
1.636 |
1.531 |
C3 |
H31 |
1.114 |
1.090 |
C3 |
H32 |
1.115 |
1.090 |
C4 |
C5 |
1.608 |
1.531 |
C4 |
H41 |
1.115 |
1.090 |
C4 |
H42 |
1.116 |
1.090 |
C5 |
C6 |
1.506 |
1.531 |
C5 |
H51 |
1.114 |
1.090 |
C5 |
H52 |
1.114 |
1.089 |
C6 |
H61 |
1.116 |
1.090 |
C6 |
H62 |
1.115 |
1.090 |
C1' |
C2' |
1.573 |
1.530 |
C1' |
H1'1 |
1.115 |
1.089 |
C1' |
H1'2 |
1.115 |
1.090 |
C2' |
H2'1 |
1.116 |
1.089 |
C2' |
H2'2 |
1.115 |
1.090 |
C2' |
H2'3 |
1.115 |
1.090 |
Bond Angles for 2EP
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
N1 |
C6 |
123.1 |
107.3 |
C2 |
N1 |
HN1 |
107.4 |
106.6 |
N1 |
C2 |
C3 |
104.5 |
109.7 |
N1 |
C2 |
C1' |
116.0 |
109.5 |
N1 |
C2 |
H2 |
108.3 |
109.4 |
C6 |
N1 |
HN1 |
107.4 |
106.7 |
N1 |
C6 |
C5 |
109.3 |
109.7 |
N1 |
C6 |
H61 |
112.3 |
109.4 |
N1 |
C6 |
H62 |
112.3 |
109.5 |
C3 |
C2 |
C1' |
108.6 |
109.4 |
C3 |
C2 |
H2 |
115.7 |
109.4 |
C2 |
C3 |
C4 |
112.9 |
109.2 |
C2 |
C3 |
H31 |
111.0 |
109.6 |
C2 |
C3 |
H32 |
110.9 |
109.5 |
C1' |
C2 |
H2 |
104.2 |
109.4 |
C2 |
C1' |
C2' |
116.1 |
109.5 |
C2 |
C1' |
H1'1 |
109.8 |
109.5 |
C2 |
C1' |
H1'2 |
109.9 |
109.5 |
C4 |
C3 |
H31 |
111.0 |
109.6 |
C4 |
C3 |
H32 |
111.0 |
109.5 |
C3 |
C4 |
C5 |
113.7 |
109.0 |
C3 |
C4 |
H41 |
110.6 |
109.5 |
C3 |
C4 |
H42 |
110.6 |
109.6 |
H31 |
C3 |
H32 |
99.3 |
109.5 |
C5 |
C4 |
H41 |
110.7 |
109.5 |
C5 |
C4 |
H42 |
110.6 |
109.5 |
C4 |
C5 |
C6 |
111.2 |
109.2 |
C4 |
C5 |
H51 |
111.6 |
109.6 |
C4 |
C5 |
H52 |
111.6 |
109.5 |
H41 |
C4 |
H42 |
99.6 |
109.6 |
C6 |
C5 |
H51 |
111.6 |
109.5 |
C6 |
C5 |
H52 |
111.6 |
109.5 |
C5 |
C6 |
H61 |
112.3 |
109.4 |
C5 |
C6 |
H62 |
112.3 |
109.4 |
H51 |
C5 |
H52 |
98.8 |
109.5 |
H61 |
C6 |
H62 |
98.1 |
109.3 |
C2' |
C1' |
H1'1 |
109.8 |
109.4 |
C2' |
C1' |
H1'2 |
109.8 |
109.4 |
C1' |
C2' |
H2'1 |
116.1 |
109.5 |
C1' |
C2' |
H2'2 |
109.8 |
109.4 |
C1' |
C2' |
H2'3 |
109.8 |
109.5 |
H1'1 |
C1' |
H1'2 |
100.4 |
109.5 |
H2'1 |
C2' |
H2'2 |
109.8 |
109.5 |
H2'1 |
C2' |
H2'3 |
109.7 |
109.5 |
H2'2 |
C2' |
H2'3 |
100.4 |
109.4 |
Torsion Angles for 2EP
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
N1 |
C2 |
HN1 |
125.3 |
114.1 |
C2 |
N1 |
C6 |
C5 |
304.9 |
65.7 |
C2 |
N1 |
C6 |
H61 |
70.2 |
305.6 |
C2 |
N1 |
C6 |
H62 |
179.6 |
185.8 |
C3 |
C2 |
N1 |
C1' |
119.5 |
120.1 |
C3 |
C2 |
N1 |
H2 |
236.1 |
239.9 |
N1 |
C2 |
C3 |
C4 |
310.2 |
61.4 |
N1 |
C2 |
C3 |
H31 |
75.5 |
181.4 |
N1 |
C2 |
C3 |
H32 |
185.0 |
301.5 |
C1' |
C2 |
N1 |
H2 |
116.6 |
119.8 |
N1 |
C2 |
C1' |
C2' |
198.0 |
300.1 |
N1 |
C2 |
C1' |
H1'1 |
323.3 |
180.1 |
N1 |
C2 |
C1' |
H1'2 |
72.8 |
60.1 |
C2 |
N1 |
C6 |
HN1 |
234.7 |
246.0 |
C6 |
N1 |
C2 |
C3 |
54.9 |
294.3 |
C6 |
N1 |
C2 |
C1' |
295.4 |
174.2 |
C6 |
N1 |
C2 |
H2 |
178.8 |
54.4 |
C4 |
C5 |
C6 |
N1 |
47.5 |
298.6 |
N1 |
C6 |
C5 |
H51 |
282.2 |
178.6 |
N1 |
C6 |
C5 |
H52 |
172.8 |
58.5 |
C5 |
C6 |
N1 |
H61 |
234.7 |
120.1 |
C5 |
C6 |
N1 |
H62 |
125.3 |
239.9 |
H61 |
C6 |
N1 |
H62 |
250.6 |
119.8 |
C2 |
N1 |
HN1 |
C6 |
134.2 |
114.5 |
HN1 |
N1 |
C2 |
C3 |
289.6 |
180.2 |
HN1 |
N1 |
C2 |
C1' |
170.1 |
60.1 |
HN1 |
N1 |
C2 |
H2 |
53.5 |
300.3 |
HN1 |
N1 |
C6 |
C5 |
70.1 |
179.7 |
HN1 |
N1 |
C6 |
H61 |
195.4 |
59.6 |
HN1 |
N1 |
C6 |
H62 |
304.9 |
299.8 |
C3 |
C2 |
N1 |
C6 |
54.9 |
294.3 |
C3 |
C2 |
N1 |
HN1 |
289.6 |
180.2 |
N1 |
C2 |
C3 |
C1' |
235.6 |
239.9 |
N1 |
C2 |
C3 |
H2 |
119.0 |
120.1 |
C1' |
C2 |
C3 |
H2 |
243.4 |
240.2 |
C3 |
C2 |
C1' |
C2' |
80.7 |
179.9 |
C3 |
C2 |
C1' |
H1'1 |
206.0 |
59.8 |
C3 |
C2 |
C1' |
H1'2 |
315.5 |
299.8 |
C4 |
C3 |
C2 |
H31 |
234.7 |
240.0 |
C4 |
C3 |
C2 |
H32 |
125.3 |
119.9 |
C2 |
C3 |
C4 |
C5 |
53.9 |
304.4 |
C2 |
C3 |
C4 |
H41 |
179.2 |
64.3 |
C2 |
C3 |
C4 |
H42 |
288.6 |
184.6 |
H31 |
C3 |
C2 |
H32 |
250.6 |
239.9 |
C1' |
C2 |
N1 |
C6 |
295.4 |
174.2 |
C1' |
C2 |
N1 |
HN1 |
170.1 |
60.1 |
N1 |
C2 |
C1' |
C3 |
117.3 |
120.3 |
N1 |
C2 |
C1' |
H2 |
241.1 |
240.1 |
C3 |
C2 |
C1' |
H2 |
123.8 |
119.8 |
C1' |
C2 |
C3 |
C4 |
74.6 |
181.5 |
C1' |
C2 |
C3 |
H31 |
199.9 |
301.5 |
C1' |
C2 |
C3 |
H32 |
309.3 |
61.6 |
C2' |
C1' |
C2 |
H1'1 |
234.8 |
120.0 |
C2' |
C1' |
C2 |
H1'2 |
125.2 |
240.1 |
C2 |
C1' |
C2' |
H2'1 |
180.0 |
180.0 |
C2 |
C1' |
C2' |
H2'2 |
305.3 |
300.0 |
C2 |
C1' |
C2' |
H2'3 |
54.8 |
59.9 |
H1'1 |
C1' |
C2 |
H1'2 |
250.5 |
120.0 |
H2 |
C2 |
N1 |
C6 |
178.8 |
54.4 |
H2 |
C2 |
N1 |
HN1 |
53.5 |
300.3 |
N1 |
C2 |
H2 |
C3 |
243.1 |
239.7 |
N1 |
C2 |
H2 |
C1' |
124.0 |
119.9 |
C3 |
C2 |
H2 |
C1' |
240.9 |
240.2 |
H2 |
C2 |
C3 |
C4 |
191.2 |
301.3 |
H2 |
C2 |
C3 |
H31 |
316.5 |
61.3 |
H2 |
C2 |
C3 |
H32 |
66.0 |
181.4 |
H2 |
C2 |
C1' |
C2' |
316.9 |
60.0 |
H2 |
C2 |
C1' |
H1'1 |
82.1 |
300.0 |
H2 |
C2 |
C1' |
H1'2 |
191.7 |
180.0 |
C4 |
C3 |
C2 |
C1' |
74.6 |
181.5 |
C4 |
C3 |
C2 |
H2 |
191.2 |
301.3 |
C2 |
C3 |
C4 |
H31 |
125.3 |
120.0 |
C2 |
C3 |
C4 |
H32 |
234.8 |
240.1 |
H31 |
C3 |
C4 |
H32 |
109.5 |
120.1 |
C5 |
C4 |
C3 |
H41 |
234.7 |
240.2 |
C5 |
C4 |
C3 |
H42 |
125.3 |
119.9 |
C3 |
C4 |
C5 |
C6 |
309.0 |
55.5 |
C3 |
C4 |
C5 |
H51 |
74.2 |
175.5 |
C3 |
C4 |
C5 |
H52 |
183.7 |
295.7 |
H41 |
C4 |
C3 |
H42 |
250.6 |
239.7 |
H31 |
C3 |
C2 |
C1' |
199.9 |
301.5 |
H31 |
C3 |
C2 |
H2 |
316.5 |
61.3 |
C2 |
C3 |
H31 |
C4 |
233.7 |
240.2 |
C2 |
C3 |
H31 |
H32 |
116.8 |
120.1 |
C4 |
C3 |
H31 |
H32 |
243.2 |
239.9 |
H31 |
C3 |
C4 |
C5 |
288.6 |
184.4 |
H31 |
C3 |
C4 |
H41 |
53.9 |
304.3 |
H31 |
C3 |
C4 |
H42 |
163.3 |
64.6 |
H32 |
C3 |
C2 |
C1' |
309.3 |
61.6 |
H32 |
C3 |
C2 |
H2 |
66.0 |
181.4 |
C2 |
C3 |
H32 |
C4 |
126.3 |
119.7 |
C2 |
C3 |
H32 |
H31 |
243.2 |
239.9 |
C4 |
C3 |
H32 |
H31 |
116.9 |
120.1 |
H32 |
C3 |
C4 |
C5 |
179.1 |
64.3 |
H32 |
C3 |
C4 |
H41 |
304.4 |
184.2 |
H32 |
C3 |
C4 |
H42 |
53.9 |
304.5 |
N1 |
C6 |
C5 |
C4 |
47.5 |
298.6 |
C5 |
C4 |
C3 |
H31 |
288.6 |
184.4 |
C5 |
C4 |
C3 |
H32 |
179.1 |
64.3 |
C3 |
C4 |
C5 |
H41 |
125.3 |
119.8 |
C3 |
C4 |
C5 |
H42 |
234.7 |
240.1 |
H41 |
C4 |
C5 |
H42 |
109.5 |
120.3 |
C6 |
C5 |
C4 |
H51 |
234.7 |
240.1 |
C6 |
C5 |
C4 |
H52 |
125.2 |
119.9 |
C4 |
C5 |
C6 |
H61 |
282.3 |
58.7 |
C4 |
C5 |
C6 |
H62 |
172.8 |
178.5 |
H51 |
C5 |
C4 |
H52 |
250.5 |
239.8 |
H41 |
C4 |
C3 |
H31 |
53.9 |
304.3 |
H41 |
C4 |
C3 |
H32 |
304.4 |
184.2 |
C3 |
C4 |
H41 |
C5 |
233.0 |
240.5 |
C3 |
C4 |
H41 |
H42 |
116.5 |
120.3 |
C5 |
C4 |
H41 |
H42 |
243.5 |
239.8 |
H41 |
C4 |
C5 |
C6 |
183.7 |
295.7 |
H41 |
C4 |
C5 |
H51 |
309.0 |
55.7 |
H41 |
C4 |
C5 |
H52 |
58.5 |
175.9 |
H42 |
C4 |
C3 |
H31 |
163.3 |
64.6 |
H42 |
C4 |
C3 |
H32 |
53.9 |
304.5 |
C3 |
C4 |
H42 |
C5 |
127.0 |
119.5 |
C3 |
C4 |
H42 |
H41 |
243.5 |
239.7 |
C5 |
C4 |
H42 |
H41 |
116.5 |
120.2 |
H42 |
C4 |
C5 |
C6 |
74.2 |
175.4 |
H42 |
C4 |
C5 |
H51 |
199.5 |
295.4 |
H42 |
C4 |
C5 |
H52 |
309.0 |
55.6 |
C5 |
C6 |
N1 |
HN1 |
70.1 |
179.7 |
N1 |
C6 |
C5 |
H61 |
125.3 |
239.9 |
N1 |
C6 |
C5 |
H62 |
234.7 |
120.1 |
C6 |
C5 |
C4 |
H41 |
183.7 |
295.7 |
C6 |
C5 |
C4 |
H42 |
74.2 |
175.4 |
C4 |
C5 |
C6 |
H51 |
125.3 |
120.0 |
C4 |
C5 |
C6 |
H52 |
234.8 |
240.1 |
H51 |
C5 |
C6 |
H52 |
109.5 |
120.1 |
H61 |
C6 |
C5 |
H62 |
109.5 |
240.2 |
H51 |
C5 |
C4 |
H41 |
309.0 |
55.7 |
H51 |
C5 |
C4 |
H42 |
199.5 |
295.4 |
C4 |
C5 |
H51 |
C6 |
235.0 |
240.3 |
C4 |
C5 |
H51 |
H52 |
117.5 |
120.2 |
C6 |
C5 |
H51 |
H52 |
242.5 |
239.9 |
H51 |
C5 |
C6 |
H61 |
157.0 |
298.7 |
H51 |
C5 |
C6 |
H62 |
47.5 |
58.5 |
H52 |
C5 |
C4 |
H41 |
58.5 |
175.9 |
H52 |
C5 |
C4 |
H42 |
309.0 |
55.6 |
C4 |
C5 |
H52 |
C6 |
125.0 |
119.7 |
C4 |
C5 |
H52 |
H51 |
242.5 |
239.8 |
C6 |
C5 |
H52 |
H51 |
117.5 |
120.1 |
H52 |
C5 |
C6 |
H61 |
47.5 |
178.6 |
H52 |
C5 |
C6 |
H62 |
298.0 |
298.4 |
H61 |
C6 |
N1 |
HN1 |
195.4 |
59.6 |
N1 |
C6 |
H61 |
C5 |
236.4 |
120.3 |
N1 |
C6 |
H61 |
H62 |
118.2 |
240.1 |
H61 |
C6 |
C5 |
H51 |
157.0 |
298.7 |
H61 |
C6 |
C5 |
H52 |
47.5 |
178.6 |
C5 |
C6 |
H61 |
H62 |
241.8 |
119.8 |
H62 |
C6 |
N1 |
HN1 |
304.9 |
299.8 |
N1 |
C6 |
H62 |
C5 |
123.6 |
239.7 |
N1 |
C6 |
H62 |
H61 |
241.8 |
119.9 |
H62 |
C6 |
C5 |
H51 |
47.5 |
58.5 |
H62 |
C6 |
C5 |
H52 |
298.0 |
298.4 |
C5 |
C6 |
H62 |
H61 |
118.2 |
240.2 |
C2' |
C1' |
C2 |
H2 |
316.9 |
60.0 |
C2 |
C1' |
C2' |
H1'1 |
125.3 |
239.9 |
C2 |
C1' |
C2' |
H1'2 |
234.7 |
120.0 |
H1'1 |
C1' |
C2' |
H1'2 |
109.4 |
240.1 |
H2'1 |
C2' |
C1' |
H2'2 |
234.7 |
240.0 |
H2'1 |
C2' |
C1' |
H2'3 |
125.2 |
120.1 |
H2'2 |
C2' |
C1' |
H2'3 |
250.5 |
240.1 |
H1'1 |
C1' |
C2 |
H2 |
82.1 |
300.0 |
C2 |
C1' |
H1'1 |
C2' |
231.2 |
120.1 |
C2 |
C1' |
H1'1 |
H1'2 |
115.7 |
240.0 |
C2' |
C1' |
H1'1 |
H1'2 |
244.5 |
119.9 |
H1'1 |
C1' |
C2' |
H2'1 |
54.7 |
300.1 |
H1'1 |
C1' |
C2' |
H2'2 |
180.0 |
60.1 |
H1'1 |
C1' |
C2' |
H2'3 |
289.5 |
180.0 |
H1'2 |
C1' |
C2 |
H2 |
191.7 |
180.0 |
C2 |
C1' |
H1'2 |
C2' |
128.8 |
240.0 |
C2 |
C1' |
H1'2 |
H1'1 |
244.4 |
120.1 |
C2' |
C1' |
H1'2 |
H1'1 |
115.5 |
240.1 |
H1'2 |
C1' |
C2' |
H2'1 |
305.3 |
60.0 |
H1'2 |
C1' |
C2' |
H2'2 |
70.6 |
180.0 |
H1'2 |
C1' |
C2' |
H2'3 |
180.1 |
299.9 |
H2'1 |
C2' |
C1' |
H1'1 |
54.7 |
300.1 |
H2'1 |
C2' |
C1' |
H1'2 |
305.3 |
60.0 |
C1' |
C2' |
H2'1 |
H2'2 |
125.3 |
120.0 |
C1' |
C2' |
H2'1 |
H2'3 |
234.8 |
239.9 |
H2'2 |
C2' |
H2'1 |
H2'3 |
109.5 |
119.9 |
H2'2 |
C2' |
C1' |
H1'1 |
180.0 |
60.1 |
H2'2 |
C2' |
C1' |
H1'2 |
70.6 |
180.0 |
C1' |
C2' |
H2'2 |
H2'1 |
231.2 |
240.0 |
C1' |
C2' |
H2'2 |
H2'3 |
115.6 |
119.9 |
H2'1 |
C2' |
H2'2 |
H2'3 |
244.5 |
240.0 |
H2'3 |
C2' |
C1' |
H1'1 |
289.5 |
180.0 |
H2'3 |
C2' |
C1' |
H1'2 |
180.1 |
299.9 |
C1' |
C2' |
H2'3 |
H2'1 |
128.8 |
120.1 |
C1' |
C2' |
H2'3 |
H2'2 |
244.3 |
240.1 |
H2'1 |
C2' |
H2'3 |
H2'2 |
115.6 |
120.0 |