PDB Chemical Component 13D
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 13D
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CA |
CB |
1.540 |
1.530 |
| CA |
NAA |
1.470 |
1.469 |
| CA |
HAC1 |
1.100 |
1.090 |
| CA |
HAC2 |
1.100 |
1.090 |
| CB |
CC |
1.531 |
1.530 |
| CB |
HBC1 |
1.100 |
1.091 |
| CB |
HBC2 |
1.100 |
1.091 |
| CC |
ND |
1.474 |
1.469 |
| CC |
HCC1 |
1.100 |
1.090 |
| CC |
HCC2 |
1.100 |
1.090 |
| ND |
HDN1 |
1.000 |
1.010 |
| ND |
HDN2 |
1.000 |
1.009 |
| NAA |
HAA1 |
1.000 |
1.010 |
| NAA |
HAA2 |
1.000 |
1.009 |
Bond Angles for 13D
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CB |
CA |
NAA |
110.5 |
109.5 |
| CB |
CA |
HAC1 |
108.9 |
109.4 |
| CB |
CA |
HAC2 |
109.1 |
109.5 |
| CA |
CB |
CC |
111.2 |
109.5 |
| CA |
CB |
HBC1 |
108.5 |
109.5 |
| CA |
CB |
HBC2 |
108.9 |
109.5 |
| NAA |
CA |
HAC1 |
108.9 |
109.5 |
| NAA |
CA |
HAC2 |
109.1 |
109.4 |
| CA |
NAA |
HAA1 |
109.5 |
106.7 |
| CA |
NAA |
HAA2 |
109.5 |
106.7 |
| HAC1 |
CA |
HAC2 |
110.3 |
109.5 |
| CC |
CB |
HBC1 |
108.5 |
109.5 |
| CC |
CB |
HBC2 |
108.9 |
109.5 |
| CB |
CC |
ND |
109.4 |
109.5 |
| CB |
CC |
HCC1 |
109.5 |
109.5 |
| CB |
CC |
HCC2 |
109.5 |
109.4 |
| HBC1 |
CB |
HBC2 |
110.8 |
109.4 |
| ND |
CC |
HCC1 |
109.5 |
109.4 |
| ND |
CC |
HCC2 |
109.5 |
109.5 |
| CC |
ND |
HDN1 |
109.5 |
106.7 |
| CC |
ND |
HDN2 |
109.5 |
106.7 |
| HCC1 |
CC |
HCC2 |
109.4 |
109.5 |
| HDN1 |
ND |
HDN2 |
109.4 |
106.7 |
| HAA1 |
NAA |
HAA2 |
109.5 |
106.7 |
Torsion Angles for 13D
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| NAA |
CA |
CB |
HAC1 |
119.6 |
120.0 |
| NAA |
CA |
CB |
HAC2 |
240.0 |
240.0 |
| CB |
CA |
NAA |
HAA1 |
156.7 |
180.0 |
| CB |
CA |
NAA |
HAA2 |
36.7 |
293.8 |
| HAC1 |
CA |
CB |
HAC2 |
120.4 |
120.0 |
| CC |
CB |
CA |
HBC1 |
119.3 |
240.0 |
| CC |
CB |
CA |
HBC2 |
240.0 |
120.0 |
| CA |
CB |
CC |
ND |
149.4 |
180.0 |
| CA |
CB |
CC |
HCC1 |
29.4 |
300.0 |
| CA |
CB |
CC |
HCC2 |
269.4 |
60.0 |
| HBC1 |
CB |
CA |
HBC2 |
120.7 |
240.1 |
| CB |
CA |
NAA |
HAC1 |
240.4 |
240.0 |
| CB |
CA |
NAA |
HAC2 |
120.0 |
120.0 |
| NAA |
CA |
CB |
CC |
70.0 |
180.0 |
| NAA |
CA |
CB |
HBC1 |
310.8 |
300.0 |
| NAA |
CA |
CB |
HBC2 |
190.0 |
60.0 |
| HAC1 |
CA |
NAA |
HAC2 |
239.6 |
240.0 |
| HAA1 |
NAA |
CA |
HAA2 |
120.0 |
246.2 |
| CB |
CA |
HAC1 |
NAA |
120.6 |
120.0 |
| CB |
CA |
HAC1 |
HAC2 |
240.3 |
240.0 |
| HAC1 |
CA |
CB |
CC |
310.4 |
60.0 |
| HAC1 |
CA |
CB |
HBC1 |
191.2 |
180.0 |
| HAC1 |
CA |
CB |
HBC2 |
70.5 |
300.0 |
| NAA |
CA |
HAC1 |
HAC2 |
119.7 |
120.0 |
| HAC1 |
CA |
NAA |
HAA1 |
276.2 |
299.9 |
| HAC1 |
CA |
NAA |
HAA2 |
156.2 |
53.8 |
| CB |
CA |
HAC2 |
NAA |
239.1 |
240.0 |
| CB |
CA |
HAC2 |
HAC1 |
119.6 |
120.0 |
| HAC2 |
CA |
CB |
CC |
190.0 |
300.0 |
| HAC2 |
CA |
CB |
HBC1 |
70.7 |
60.0 |
| HAC2 |
CA |
CB |
HBC2 |
310.0 |
180.0 |
| NAA |
CA |
HAC2 |
HAC1 |
240.4 |
240.0 |
| HAC2 |
CA |
NAA |
HAA1 |
36.7 |
60.0 |
| HAC2 |
CA |
NAA |
HAA2 |
276.6 |
173.8 |
| CC |
CB |
CA |
NAA |
70.0 |
180.0 |
| CC |
CB |
CA |
HAC1 |
310.4 |
60.0 |
| CC |
CB |
CA |
HAC2 |
190.0 |
300.0 |
| CA |
CB |
CC |
HBC1 |
240.8 |
120.0 |
| CA |
CB |
CC |
HBC2 |
120.0 |
240.0 |
| HBC1 |
CB |
CC |
HBC2 |
239.3 |
119.9 |
| ND |
CC |
CB |
HCC1 |
120.0 |
240.0 |
| ND |
CC |
CB |
HCC2 |
240.0 |
120.0 |
| CB |
CC |
ND |
HDN1 |
288.2 |
180.0 |
| CB |
CC |
ND |
HDN2 |
168.2 |
293.8 |
| HCC1 |
CC |
CB |
HCC2 |
120.0 |
240.0 |
| HBC1 |
CB |
CA |
NAA |
310.8 |
300.0 |
| HBC1 |
CB |
CA |
HAC1 |
191.2 |
180.0 |
| HBC1 |
CB |
CA |
HAC2 |
70.7 |
60.0 |
| CA |
CB |
HBC1 |
CC |
120.9 |
240.0 |
| CA |
CB |
HBC1 |
HBC2 |
240.5 |
120.0 |
| CC |
CB |
HBC1 |
HBC2 |
119.5 |
240.0 |
| HBC1 |
CB |
CC |
ND |
268.6 |
60.0 |
| HBC1 |
CB |
CC |
HCC1 |
148.6 |
180.0 |
| HBC1 |
CB |
CC |
HCC2 |
28.6 |
300.0 |
| HBC2 |
CB |
CA |
NAA |
190.0 |
60.0 |
| HBC2 |
CB |
CA |
HAC1 |
70.5 |
300.0 |
| HBC2 |
CB |
CA |
HAC2 |
310.0 |
180.0 |
| CA |
CB |
HBC2 |
CC |
238.6 |
120.0 |
| CA |
CB |
HBC2 |
HBC1 |
119.3 |
240.0 |
| CC |
CB |
HBC2 |
HBC1 |
240.7 |
120.0 |
| HBC2 |
CB |
CC |
ND |
29.4 |
300.0 |
| HBC2 |
CB |
CC |
HCC1 |
269.4 |
60.0 |
| HBC2 |
CB |
CC |
HCC2 |
149.4 |
180.0 |
| ND |
CC |
CB |
HBC1 |
268.6 |
60.0 |
| ND |
CC |
CB |
HBC2 |
29.4 |
300.0 |
| CB |
CC |
ND |
HCC1 |
240.0 |
120.0 |
| CB |
CC |
ND |
HCC2 |
120.0 |
240.0 |
| HCC1 |
CC |
ND |
HCC2 |
240.0 |
120.0 |
| HDN1 |
ND |
CC |
HDN2 |
120.0 |
246.2 |
| HCC1 |
CC |
CB |
HBC1 |
148.6 |
180.0 |
| HCC1 |
CC |
CB |
HBC2 |
269.4 |
60.0 |
| CB |
CC |
HCC1 |
ND |
120.0 |
240.0 |
| CB |
CC |
HCC1 |
HCC2 |
240.0 |
120.0 |
| ND |
CC |
HCC1 |
HCC2 |
120.0 |
240.0 |
| HCC1 |
CC |
ND |
HDN1 |
48.2 |
60.0 |
| HCC1 |
CC |
ND |
HDN2 |
288.2 |
173.8 |
| HCC2 |
CC |
CB |
HBC1 |
28.6 |
300.0 |
| HCC2 |
CC |
CB |
HBC2 |
149.4 |
180.0 |
| CB |
CC |
HCC2 |
ND |
240.1 |
120.0 |
| CB |
CC |
HCC2 |
HCC1 |
120.1 |
240.0 |
| ND |
CC |
HCC2 |
HCC1 |
240.0 |
120.0 |
| HCC2 |
CC |
ND |
HDN1 |
168.2 |
299.9 |
| HCC2 |
CC |
ND |
HDN2 |
48.2 |
53.8 |
| HDN1 |
ND |
CC |
HCC1 |
48.2 |
60.0 |
| HDN1 |
ND |
CC |
HCC2 |
168.2 |
299.9 |
| CC |
ND |
HDN1 |
HDN2 |
240.0 |
113.8 |
| HDN2 |
ND |
CC |
HCC1 |
288.2 |
173.8 |
| HDN2 |
ND |
CC |
HCC2 |
48.2 |
53.8 |
| CC |
ND |
HDN2 |
HDN1 |
120.0 |
246.2 |
| HAA1 |
NAA |
CA |
HAC1 |
276.2 |
299.9 |
| HAA1 |
NAA |
CA |
HAC2 |
36.7 |
60.0 |
| CA |
NAA |
HAA1 |
HAA2 |
240.0 |
113.8 |
| HAA2 |
NAA |
CA |
HAC1 |
156.2 |
53.8 |
| HAA2 |
NAA |
CA |
HAC2 |
276.6 |
173.8 |
| CA |
NAA |
HAA2 |
HAA1 |
120.0 |
246.2 |