PDB Chemical Component 104
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 104
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C2 |
1.508 |
1.469 |
| N1 |
H11 |
1.020 |
1.009 |
| N1 |
H12 |
1.021 |
1.008 |
| C2 |
C3 |
1.437 |
1.529 |
| C2 |
H21 |
1.114 |
1.089 |
| C2 |
H22 |
1.115 |
1.090 |
| C3 |
N4 |
1.488 |
1.469 |
| C3 |
H31 |
1.114 |
1.089 |
| C3 |
H32 |
1.115 |
1.090 |
| N4 |
C5 |
1.506 |
1.468 |
| N4 |
HN4 |
1.020 |
1.009 |
| C5 |
C6 |
1.506 |
1.528 |
| C5 |
H51 |
1.114 |
1.089 |
| C5 |
H52 |
1.115 |
1.091 |
| C6 |
N7 |
1.526 |
1.468 |
| C6 |
H61 |
1.115 |
1.089 |
| C6 |
H62 |
1.114 |
1.090 |
| N7 |
C8 |
1.501 |
1.469 |
| N7 |
HN7 |
1.019 |
1.008 |
| C8 |
C9 |
1.526 |
1.529 |
| C8 |
H81 |
1.114 |
1.089 |
| C8 |
H82 |
1.116 |
1.090 |
| C9 |
N10 |
1.503 |
1.469 |
| C9 |
H91 |
1.116 |
1.089 |
| C9 |
H92 |
1.114 |
1.090 |
| N10 |
H101 |
1.020 |
1.008 |
| N10 |
H102 |
1.021 |
1.009 |
Bond Angles for 104
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
H11 |
122.5 |
106.6 |
| C2 |
N1 |
H12 |
107.6 |
106.8 |
| N1 |
C2 |
C3 |
122.5 |
109.5 |
| N1 |
C2 |
H21 |
107.6 |
109.5 |
| N1 |
C2 |
H22 |
107.6 |
109.4 |
| H11 |
N1 |
H12 |
107.5 |
106.7 |
| C3 |
C2 |
H21 |
107.6 |
109.5 |
| C3 |
C2 |
H22 |
107.6 |
109.4 |
| C2 |
C3 |
N4 |
134.4 |
109.5 |
| C2 |
C3 |
H31 |
103.6 |
109.5 |
| C2 |
C3 |
H32 |
103.6 |
109.5 |
| H21 |
C2 |
H22 |
102.2 |
109.5 |
| N4 |
C3 |
H31 |
103.6 |
109.5 |
| N4 |
C3 |
H32 |
103.6 |
109.5 |
| C3 |
N4 |
C5 |
115.2 |
106.8 |
| C3 |
N4 |
HN4 |
110.1 |
106.7 |
| H31 |
C3 |
H32 |
105.0 |
109.4 |
| C5 |
N4 |
HN4 |
110.1 |
106.7 |
| N4 |
C5 |
C6 |
118.1 |
109.5 |
| N4 |
C5 |
H51 |
109.1 |
109.5 |
| N4 |
C5 |
H52 |
109.1 |
109.4 |
| C6 |
C5 |
H51 |
109.1 |
109.5 |
| C6 |
C5 |
H52 |
109.1 |
109.5 |
| C5 |
C6 |
N7 |
109.0 |
109.5 |
| C5 |
C6 |
H61 |
112.3 |
109.6 |
| C5 |
C6 |
H62 |
112.4 |
109.4 |
| H51 |
C5 |
H52 |
101.0 |
109.4 |
| N7 |
C6 |
H61 |
112.4 |
109.5 |
| N7 |
C6 |
H62 |
112.4 |
109.3 |
| C6 |
N7 |
C8 |
158.2 |
106.8 |
| C6 |
N7 |
HN7 |
96.3 |
106.8 |
| H61 |
C6 |
H62 |
98.1 |
109.5 |
| C8 |
N7 |
HN7 |
96.4 |
106.7 |
| N7 |
C8 |
C9 |
128.0 |
109.5 |
| N7 |
C8 |
H81 |
105.7 |
109.5 |
| N7 |
C8 |
H82 |
105.7 |
109.4 |
| C9 |
C8 |
H81 |
105.7 |
109.5 |
| C9 |
C8 |
H82 |
105.7 |
109.4 |
| C8 |
C9 |
N10 |
113.0 |
109.5 |
| C8 |
C9 |
H91 |
110.9 |
109.5 |
| C8 |
C9 |
H92 |
110.9 |
109.5 |
| H81 |
C8 |
H82 |
103.6 |
109.5 |
| N10 |
C9 |
H91 |
110.9 |
109.5 |
| N10 |
C9 |
H92 |
110.9 |
109.5 |
| C9 |
N10 |
H101 |
113.0 |
106.8 |
| C9 |
N10 |
H102 |
110.9 |
106.7 |
| H91 |
C9 |
H92 |
99.4 |
109.4 |
| H101 |
N10 |
H102 |
110.9 |
106.7 |
Torsion Angles for 104
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H11 |
N1 |
C2 |
H12 |
125.2 |
113.8 |
| C3 |
C2 |
N1 |
H21 |
234.7 |
239.9 |
| C3 |
C2 |
N1 |
H22 |
125.3 |
120.0 |
| N1 |
C2 |
C3 |
N4 |
3.1 |
180.0 |
| N1 |
C2 |
C3 |
H31 |
128.3 |
300.1 |
| N1 |
C2 |
C3 |
H32 |
237.8 |
60.0 |
| H21 |
C2 |
N1 |
H22 |
250.5 |
240.0 |
| C2 |
N1 |
H11 |
H12 |
234.7 |
246.1 |
| H11 |
N1 |
C2 |
C3 |
180.0 |
293.8 |
| H11 |
N1 |
C2 |
H21 |
305.2 |
53.8 |
| H11 |
N1 |
C2 |
H22 |
54.7 |
173.8 |
| C2 |
N1 |
H12 |
H11 |
133.7 |
113.8 |
| H12 |
N1 |
C2 |
C3 |
54.8 |
180.0 |
| H12 |
N1 |
C2 |
H21 |
180.0 |
300.0 |
| H12 |
N1 |
C2 |
H22 |
289.5 |
60.0 |
| C3 |
C2 |
N1 |
H11 |
180.0 |
293.8 |
| C3 |
C2 |
N1 |
H12 |
54.8 |
180.0 |
| N1 |
C2 |
C3 |
H21 |
125.3 |
120.1 |
| N1 |
C2 |
C3 |
H22 |
234.8 |
240.0 |
| H21 |
C2 |
C3 |
H22 |
109.5 |
120.0 |
| N4 |
C3 |
C2 |
H31 |
234.7 |
239.9 |
| N4 |
C3 |
C2 |
H32 |
125.2 |
120.0 |
| C2 |
C3 |
N4 |
C5 |
153.2 |
180.0 |
| C2 |
C3 |
N4 |
HN4 |
27.9 |
293.8 |
| H31 |
C3 |
C2 |
H32 |
250.5 |
240.1 |
| H21 |
C2 |
N1 |
H11 |
305.2 |
53.8 |
| H21 |
C2 |
N1 |
H12 |
180.0 |
300.0 |
| N1 |
C2 |
H21 |
C3 |
226.3 |
239.9 |
| N1 |
C2 |
H21 |
H22 |
113.1 |
120.0 |
| C3 |
C2 |
H21 |
H22 |
246.8 |
240.1 |
| H21 |
C2 |
C3 |
N4 |
237.8 |
59.9 |
| H21 |
C2 |
C3 |
H31 |
3.1 |
180.0 |
| H21 |
C2 |
C3 |
H32 |
112.5 |
299.9 |
| H22 |
C2 |
N1 |
H11 |
54.7 |
173.8 |
| H22 |
C2 |
N1 |
H12 |
289.5 |
60.0 |
| N1 |
C2 |
H22 |
C3 |
133.7 |
120.0 |
| N1 |
C2 |
H22 |
H21 |
246.9 |
240.0 |
| C3 |
C2 |
H22 |
H21 |
113.1 |
120.0 |
| H22 |
C2 |
C3 |
N4 |
128.3 |
300.0 |
| H22 |
C2 |
C3 |
H31 |
253.6 |
60.0 |
| H22 |
C2 |
C3 |
H32 |
3.1 |
179.9 |
| N4 |
C3 |
C2 |
H21 |
237.8 |
59.9 |
| N4 |
C3 |
C2 |
H22 |
128.3 |
300.0 |
| C2 |
C3 |
N4 |
H31 |
125.3 |
120.1 |
| C2 |
C3 |
N4 |
H32 |
234.8 |
240.0 |
| H31 |
C3 |
N4 |
H32 |
109.5 |
119.9 |
| C5 |
N4 |
C3 |
HN4 |
125.3 |
246.2 |
| C3 |
N4 |
C5 |
C6 |
222.6 |
180.0 |
| C3 |
N4 |
C5 |
H51 |
347.9 |
300.0 |
| C3 |
N4 |
C5 |
H52 |
97.4 |
60.0 |
| H31 |
C3 |
C2 |
H21 |
3.1 |
180.0 |
| H31 |
C3 |
C2 |
H22 |
253.6 |
60.0 |
| C2 |
C3 |
H31 |
N4 |
216.9 |
239.9 |
| C2 |
C3 |
H31 |
H32 |
108.4 |
119.9 |
| N4 |
C3 |
H31 |
H32 |
251.6 |
240.0 |
| H31 |
C3 |
N4 |
C5 |
27.9 |
59.9 |
| H31 |
C3 |
N4 |
HN4 |
262.6 |
173.8 |
| H32 |
C3 |
C2 |
H21 |
112.5 |
299.9 |
| H32 |
C3 |
C2 |
H22 |
3.1 |
179.9 |
| C2 |
C3 |
H32 |
N4 |
143.1 |
120.1 |
| C2 |
C3 |
H32 |
H31 |
251.6 |
240.1 |
| N4 |
C3 |
H32 |
H31 |
108.4 |
120.0 |
| H32 |
C3 |
N4 |
C5 |
278.5 |
300.0 |
| H32 |
C3 |
N4 |
HN4 |
153.1 |
53.9 |
| C5 |
N4 |
C3 |
H31 |
27.9 |
59.9 |
| C5 |
N4 |
C3 |
H32 |
278.5 |
300.0 |
| C3 |
N4 |
C5 |
HN4 |
234.7 |
113.8 |
| C6 |
C5 |
N4 |
H51 |
234.7 |
239.9 |
| C6 |
C5 |
N4 |
H52 |
125.2 |
120.0 |
| N4 |
C5 |
C6 |
N7 |
241.8 |
180.0 |
| N4 |
C5 |
C6 |
H61 |
7.0 |
300.0 |
| N4 |
C5 |
C6 |
H62 |
116.6 |
60.1 |
| H51 |
C5 |
N4 |
H52 |
250.5 |
240.1 |
| HN4 |
N4 |
C3 |
H31 |
262.6 |
173.8 |
| HN4 |
N4 |
C3 |
H32 |
153.1 |
53.9 |
| C3 |
N4 |
HN4 |
C5 |
128.2 |
246.1 |
| HN4 |
N4 |
C5 |
C6 |
347.9 |
66.2 |
| HN4 |
N4 |
C5 |
H51 |
113.2 |
186.3 |
| HN4 |
N4 |
C5 |
H52 |
222.7 |
306.2 |
| C6 |
C5 |
N4 |
HN4 |
347.9 |
66.2 |
| N4 |
C5 |
C6 |
H51 |
125.3 |
120.1 |
| N4 |
C5 |
C6 |
H52 |
234.8 |
240.1 |
| H51 |
C5 |
C6 |
H52 |
109.5 |
120.0 |
| N7 |
C6 |
C5 |
H61 |
234.8 |
239.9 |
| N7 |
C6 |
C5 |
H62 |
125.3 |
119.9 |
| C5 |
C6 |
N7 |
C8 |
301.0 |
180.0 |
| C5 |
C6 |
N7 |
HN7 |
175.7 |
293.9 |
| H61 |
C6 |
C5 |
H62 |
250.5 |
239.9 |
| H51 |
C5 |
N4 |
HN4 |
113.2 |
186.3 |
| N4 |
C5 |
H51 |
C6 |
229.7 |
239.9 |
| N4 |
C5 |
H51 |
H52 |
114.8 |
119.9 |
| C6 |
C5 |
H51 |
H52 |
245.2 |
240.0 |
| H51 |
C5 |
C6 |
N7 |
116.6 |
59.9 |
| H51 |
C5 |
C6 |
H61 |
241.8 |
180.0 |
| H51 |
C5 |
C6 |
H62 |
351.3 |
300.0 |
| H52 |
C5 |
N4 |
HN4 |
222.7 |
306.2 |
| N4 |
C5 |
H52 |
C6 |
130.3 |
120.0 |
| N4 |
C5 |
H52 |
H51 |
245.2 |
240.0 |
| C6 |
C5 |
H52 |
H51 |
114.9 |
120.0 |
| H52 |
C5 |
C6 |
N7 |
7.0 |
299.9 |
| H52 |
C5 |
C6 |
H61 |
132.3 |
60.0 |
| H52 |
C5 |
C6 |
H62 |
241.8 |
180.0 |
| N7 |
C6 |
C5 |
H51 |
116.6 |
59.9 |
| N7 |
C6 |
C5 |
H52 |
7.0 |
299.9 |
| C5 |
C6 |
N7 |
H61 |
125.2 |
120.1 |
| C5 |
C6 |
N7 |
H62 |
234.7 |
240.1 |
| H61 |
C6 |
N7 |
H62 |
109.5 |
119.9 |
| C8 |
N7 |
C6 |
HN7 |
125.3 |
246.1 |
| C6 |
N7 |
C8 |
C9 |
227.5 |
180.0 |
| C6 |
N7 |
C8 |
H81 |
352.7 |
300.1 |
| C6 |
N7 |
C8 |
H82 |
102.2 |
60.1 |
| H61 |
C6 |
C5 |
H51 |
241.8 |
180.0 |
| H61 |
C6 |
C5 |
H52 |
132.3 |
60.0 |
| C5 |
C6 |
H61 |
N7 |
236.6 |
239.9 |
| C5 |
C6 |
H61 |
H62 |
118.3 |
120.0 |
| N7 |
C6 |
H61 |
H62 |
241.7 |
240.1 |
| H61 |
C6 |
N7 |
C8 |
175.8 |
59.9 |
| H61 |
C6 |
N7 |
HN7 |
50.5 |
173.7 |
| H62 |
C6 |
C5 |
H51 |
351.3 |
300.0 |
| H62 |
C6 |
C5 |
H52 |
241.8 |
180.0 |
| C5 |
C6 |
H62 |
N7 |
123.4 |
119.9 |
| C5 |
C6 |
H62 |
H61 |
241.7 |
239.9 |
| N7 |
C6 |
H62 |
H61 |
118.3 |
119.9 |
| H62 |
C6 |
N7 |
C8 |
66.3 |
299.9 |
| H62 |
C6 |
N7 |
HN7 |
301.0 |
53.8 |
| C8 |
N7 |
C6 |
H61 |
175.8 |
59.9 |
| C8 |
N7 |
C6 |
H62 |
66.3 |
299.9 |
| C6 |
N7 |
C8 |
HN7 |
234.7 |
113.9 |
| C9 |
C8 |
N7 |
H81 |
234.7 |
239.9 |
| C9 |
C8 |
N7 |
H82 |
125.2 |
120.0 |
| N7 |
C8 |
C9 |
N10 |
172.0 |
180.0 |
| N7 |
C8 |
C9 |
H91 |
297.2 |
300.1 |
| N7 |
C8 |
C9 |
H92 |
46.7 |
60.0 |
| H81 |
C8 |
N7 |
H82 |
250.5 |
240.0 |
| HN7 |
N7 |
C6 |
H61 |
50.5 |
173.7 |
| HN7 |
N7 |
C6 |
H62 |
301.0 |
53.8 |
| C6 |
N7 |
HN7 |
C8 |
162.3 |
246.1 |
| HN7 |
N7 |
C8 |
C9 |
352.8 |
66.1 |
| HN7 |
N7 |
C8 |
H81 |
118.0 |
186.2 |
| HN7 |
N7 |
C8 |
H82 |
227.5 |
306.2 |
| C9 |
C8 |
N7 |
HN7 |
352.8 |
66.1 |
| N7 |
C8 |
C9 |
H81 |
125.3 |
120.1 |
| N7 |
C8 |
C9 |
H82 |
234.8 |
240.1 |
| H81 |
C8 |
C9 |
H82 |
109.5 |
120.0 |
| N10 |
C9 |
C8 |
H91 |
234.7 |
239.9 |
| N10 |
C9 |
C8 |
H92 |
125.3 |
120.0 |
| C8 |
C9 |
N10 |
H101 |
180.0 |
180.0 |
| C8 |
C9 |
N10 |
H102 |
54.8 |
293.8 |
| H91 |
C9 |
C8 |
H92 |
250.5 |
240.1 |
| H81 |
C8 |
N7 |
HN7 |
118.0 |
186.2 |
| N7 |
C8 |
H81 |
C9 |
221.9 |
239.9 |
| N7 |
C8 |
H81 |
H82 |
111.0 |
119.9 |
| C9 |
C8 |
H81 |
H82 |
249.0 |
240.1 |
| H81 |
C8 |
C9 |
N10 |
46.7 |
59.9 |
| H81 |
C8 |
C9 |
H91 |
172.0 |
180.0 |
| H81 |
C8 |
C9 |
H92 |
281.4 |
299.9 |
| H82 |
C8 |
N7 |
HN7 |
227.5 |
306.2 |
| N7 |
C8 |
H82 |
C9 |
138.0 |
120.0 |
| N7 |
C8 |
H82 |
H81 |
249.0 |
240.0 |
| C9 |
C8 |
H82 |
H81 |
111.0 |
120.0 |
| H82 |
C8 |
C9 |
N10 |
297.2 |
300.0 |
| H82 |
C8 |
C9 |
H91 |
62.5 |
60.0 |
| H82 |
C8 |
C9 |
H92 |
171.9 |
179.9 |
| N10 |
C9 |
C8 |
H81 |
46.7 |
59.9 |
| N10 |
C9 |
C8 |
H82 |
297.2 |
300.0 |
| C8 |
C9 |
N10 |
H91 |
125.2 |
120.1 |
| C8 |
C9 |
N10 |
H92 |
234.7 |
240.0 |
| H91 |
C9 |
N10 |
H92 |
109.5 |
119.9 |
| H101 |
N10 |
C9 |
H102 |
125.2 |
246.2 |
| H91 |
C9 |
C8 |
H81 |
172.0 |
180.0 |
| H91 |
C9 |
C8 |
H82 |
62.5 |
60.0 |
| C8 |
C9 |
H91 |
N10 |
233.6 |
239.9 |
| C8 |
C9 |
H91 |
H92 |
116.8 |
119.9 |
| N10 |
C9 |
H91 |
H92 |
243.2 |
240.0 |
| H91 |
C9 |
N10 |
H101 |
54.7 |
59.9 |
| H91 |
C9 |
N10 |
H102 |
289.5 |
173.8 |
| H92 |
C9 |
C8 |
H81 |
281.4 |
299.9 |
| H92 |
C9 |
C8 |
H82 |
171.9 |
179.9 |
| C8 |
C9 |
H92 |
N10 |
126.4 |
120.1 |
| C8 |
C9 |
H92 |
H91 |
243.3 |
240.1 |
| N10 |
C9 |
H92 |
H91 |
116.8 |
120.0 |
| H92 |
C9 |
N10 |
H101 |
305.2 |
300.0 |
| H92 |
C9 |
N10 |
H102 |
180.0 |
53.9 |
| H101 |
N10 |
C9 |
H91 |
54.7 |
59.9 |
| H101 |
N10 |
C9 |
H92 |
305.2 |
300.0 |
| C9 |
N10 |
H101 |
H102 |
234.8 |
113.8 |
| H102 |
N10 |
C9 |
H91 |
289.5 |
173.8 |
| H102 |
N10 |
C9 |
H92 |
180.0 |
53.9 |
| C9 |
N10 |
H102 |
H101 |
126.4 |
246.2 |